Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F11
         (815 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210...    31   0.83 
12_02_0797 - 23230441-23230757,23230922-23231069,23231352-232325...    31   1.4  
05_01_0299 - 2322204-2322734,2324089-2326164                           29   3.3  
04_04_1675 - 35280705-35281493,35281544-35281795                       29   5.8  
01_01_0176 + 1507592-1507678,1507803-1507931,1508076-1508252,150...    28   7.7  

>08_02_1046 -
           23919990-23920183,23920251-23920479,23920624-23921057,
           23921426-23921567,23922163-23922255,23923132-23923245,
           23924181-23924266,23924458-23924506,23924717-23924783,
           23925550-23925665,23925698-23925821,23926465-23926553,
           23926810-23927061
          Length = 662

 Score = 31.5 bits (68), Expect = 0.83
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = -3

Query: 753 VVNSLVTYFAKNMFWKIQNHEAIRSASFNIIYE*VYLQKTDKNKTKINY-YGHHVLLSSL 577
           V+ S+V++FA N+ + ++ H   RSA  N      Y+ K+ +   ++N   G  + ++SL
Sbjct: 458 VIKSIVSFFAINISFPLEGHLVTRSADPNNARRIYYVSKSVQEILQLNVEVGEQLKIASL 517

Query: 576 QIHNF 562
            +  F
Sbjct: 518 GLKMF 522


>12_02_0797 -
           23230441-23230757,23230922-23231069,23231352-23232562,
           23232639-23232894,23234073-23234309
          Length = 722

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 21/66 (31%), Positives = 30/66 (45%)
 Frame = +1

Query: 256 SRTLGGPVPDMNDHEAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSV 435
           S+T G  VP  N  EA+    L  I               +EHL  A+++CGQT  L   
Sbjct: 262 SQTEGSYVPKNNLEEAI--LLLMIILKKWYLGKTHWDPSVMEHLTFALSLCGQTSVLAKH 319

Query: 436 LQQTMP 453
           L++ +P
Sbjct: 320 LEEVLP 325


>05_01_0299 - 2322204-2322734,2324089-2326164
          Length = 868

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 421 VQSVHKQLQPARDVRLQLQDHLQPATLRRVESVARKISA*LHDRSCLEQVLRGYETSKH 245
           +  VH+QL  A++ + Q+Q   +     ++E++AR +S    +R  +E  LR  E   H
Sbjct: 674 LSQVHQQLHHAKEQKDQIQARWRQEEAGKIEAIAR-VSLEKKERDQIETSLRSEENFLH 731


>04_04_1675 - 35280705-35281493,35281544-35281795
          Length = 346

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +1

Query: 163 CVYFDQQ-RRKDPLFKKKLRERRLNAQQNASRSRTLGGPVPDMNDH 297
           C +FD + RR+D  F KKL    LN  ++ +R + L    PD  D+
Sbjct: 214 CAFFDDRARRQDDTFSKKL---ALNCTKDPNRLQNLDVITPDAFDN 256


>01_01_0176 +
           1507592-1507678,1507803-1507931,1508076-1508252,
           1508630-1508770,1509045-1509233,1509311-1509382,
           1509483-1509537,1509987-1510015,1510182-1510396,
           1510987-1511151,1511262-1511646
          Length = 547

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 504 PPILDEGEEQRNAGRRCRIKNCVFEEMKVKHGGHNN 611
           PP L + E +R   RR R+++   +E   KH GHN+
Sbjct: 452 PPSLHDDEHRR---RRRRLRSEAHDERGAKHPGHNS 484


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,926,750
Number of Sequences: 37544
Number of extensions: 382305
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)