Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F11
         (815 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)                112   4e-25
SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)                   30   2.6  
SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.0  
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        28   7.9  
SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)                     28   7.9  

>SB_30135| Best HMM Match : MAS20 (HMM E-Value=1.5e-06)
          Length = 151

 Score =  112 bits (269), Expect = 4e-25
 Identities = 50/128 (39%), Positives = 79/128 (61%), Gaps = 2/128 (1%)
 Frame = +1

Query: 124 IAVGIAGTLFLGYCVYFDQQRRKDPLFKKKLRE--RRLNAQQNASRSRTLGGPVPDMNDH 297
           +  G+ G++FL YC+YFD +RR DP +KKKL E  RR  AQ+  + +  +   +PD+ D 
Sbjct: 9   VVAGVCGSMFLAYCIYFDYKRRSDPDYKKKLIEKRRRERAQRQEADAADMQSRIPDLTDT 68

Query: 298 EAMQRFFLQQIQXXXXXXXXXXXXXXVEHLGQAVAVCGQTEQLLSVLQQTMPAPIFHLLL 477
            A+Q+FFL+++Q              V+HL  AVAVCGQ +QLL V +QT+P  +F +L+
Sbjct: 69  AAVQKFFLEEVQIGEDLLTKGEYESAVKHLTNAVAVCGQPQQLLQVFKQTLPPAVFQMLI 128

Query: 478 KKLPEVSE 501
             + ++ +
Sbjct: 129 DNINQMKD 136


>SB_3720| Best HMM Match : RVT_1 (HMM E-Value=0.0031)
          Length = 546

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/58 (27%), Positives = 28/58 (48%)
 Frame = -1

Query: 560 YSTSSSCITLLLAFIEDRRRSETSGSFLRSRWKIGAGIVC*STLSNCSVCPQTATACP 387
           Y    +C+ LL +++ DRR         R+R ++G  +   ST++    CPQ +   P
Sbjct: 424 YGAQDTCLRLLESYLSDRRNRVXXXXDRRNRVRMGKDLSSYSTVNR--GCPQGSALGP 479


>SB_26178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 897

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 6   MADIKFN*RFLRTCLYRYCA*RTIVHE*KNDGNHKNN 116
           ++DIK   R L++CL R C  R+++       +H+NN
Sbjct: 612 VSDIKKGQRTLKSCLNRGCGFRSLLRRQSKRFSHRNN 648


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 458 GAGIVC*STLSNCSVCPQTATACPRC 381
           GA   C    SNC++C +++T C  C
Sbjct: 582 GAQTKCLKCDSNCAICEESSTKCTSC 607


>SB_23774| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 805

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 162 VTQEQCSRNSDSYT*RCSCDFH 97
           V Q Q  R+ D+ T RC+CD H
Sbjct: 613 VVQRQTDRSVDNVTSRCACDTH 634


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,129,243
Number of Sequences: 59808
Number of extensions: 443419
Number of successful extensions: 1216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1215
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2275631710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)