Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F10
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)                29   2.5  
SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)                      29   2.5  
SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)                       28   7.7  

>SB_11259| Best HMM Match : Peptidase_S8 (HMM E-Value=0)
          Length = 772

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = -2

Query: 534 CQIISYVFYFSNITIRLNKGVSSANH*PVTQLVLCFMITCVLIVH*I*IFVTGSVLFICD 355
           CQ  +YV + +N+T+ L     S     +    LC++    LI+  I I VT +++FI  
Sbjct: 345 CQGSTYVLFLTNVTLLLRPFSPSF----LIVAALCYIYCLHLIIVTITIIVTITIIFIAI 400

Query: 354 NYWNA 340
            + NA
Sbjct: 401 IFMNA 405


>SB_5448| Best HMM Match : C1q (HMM E-Value=0.032)
          Length = 524

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 84  VSAINVVTGASFSKVFVQGGREVVP-VEYLQYGAPSIAVAG 203
           V+AI ++TG+ FS VF+ G R   P + Y   G   +A +G
Sbjct: 198 VAAIRILTGSGFSAVFISGLRSNPPFLSYPLNGTQYLANSG 238


>SB_23951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 547 VVKKFLPVNVEKKIEQHEKSHPDP-PCHEVK 636
           V K+ +PV V +K EQH+ S  D  PCH ++
Sbjct: 161 VEKRLVPVAVWRKGEQHQISMEDVIPCHNIE 191


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/56 (28%), Positives = 20/56 (35%)
 Frame = -1

Query: 181  APYCKYSTGTTSRPPCTNTLENEAPVTTLIAEXXXXXXXXXXXXXIFPGDRWKTTD 14
            AP    +  TT  P  T T   E P TT++ E               P +  KT D
Sbjct: 4484 APESTEAPETTMAPETTATESTETPETTIVPETTVAPETTMAPEATVPPETTKTPD 4539


>SB_11642| Best HMM Match : LIM (HMM E-Value=1.4)
          Length = 906

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 484 QPDGYIREVKYVADDLTGFNAVVKKFLPVNVEKKIEQHEKSHPDPP 621
           QPD    EV     D   F+A +++  P ++ + +E H K++P  P
Sbjct: 751 QPDSQQLEVFREEWDGVAFDAAIEQAHPSDMWRLVEHHRKNYPRLP 796


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,531,699
Number of Sequences: 59808
Number of extensions: 354367
Number of successful extensions: 837
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)