Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F09
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)              297   5e-81
SB_40033| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_22305| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     28   7.7  

>SB_23256| Best HMM Match : HMG_box (HMM E-Value=3.3e-22)
          Length = 523

 Score =  297 bits (729), Expect = 5e-81
 Identities = 138/158 (87%), Positives = 148/158 (93%)
 Frame = +2

Query: 125 LFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGD 304
           +FDDVRRMNKRQ  YQVL+F +IVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAF RGD
Sbjct: 6   MFDDVRRMNKRQLFYQVLNFAIIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFQRGD 65

Query: 305 LLFLTNYPEEPVRVGEIVVFKVEGRDIPIVHRVLKLHEKNNGTVKFLTKGDNNSVDDRGL 484
           LLFLTNY E+P+RVGEIVVFKVEGR+IPIVHRVLK+HEK NG +KFLTKGDNNSVDDRGL
Sbjct: 66  LLFLTNYKEDPIRVGEIVVFKVEGREIPIVHRVLKVHEKENGDIKFLTKGDNNSVDDRGL 125

Query: 485 YAQGQLWLTKKDVVGRARGFLPYVGMVTIYMNEYPKFK 598
           YA GQLWL KKDVVGRARGF+PYVGMVTI MN+YPKFK
Sbjct: 126 YAPGQLWLAKKDVVGRARGFVPYVGMVTILMNDYPKFK 163


>SB_40033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 240

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -1

Query: 106 FNQLFLKEIMQCSVWLLKFXPVADSCRHHNHH 11
           F  LFL EI+ C+  L+   P++   R H+ H
Sbjct: 133 FISLFLMEILPCAAMLIAHVPISVIVRSHSRH 164


>SB_22305| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = -3

Query: 524 PHLF**ATVGPGHTSLCHQRYYCHLWLR 441
           PHL    T+ P    +CH +++ +LW++
Sbjct: 41  PHLVLPITIEPNKPRMCHDKHFSNLWIK 68


>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1574

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/83 (22%), Positives = 39/83 (46%)
 Frame = +2

Query: 143 RMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSMEPAFHRGDLLFLTN 322
           R+ K   + +++  G+ ++  ++I  G+ +     S  VV+L G    A   G +LF+  
Sbjct: 144 RIKKYDMLEKLVIAGLALTVLVIISFGITMQNCFLSIFVVLLYGYYPQAIQTGTVLFINT 203

Query: 323 YPEEPVRVGEIVVFKVEGRDIPI 391
              +     +  V +V GRD+ +
Sbjct: 204 LKTKKFGSPKESVIEVHGRDLTV 226


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 30/108 (27%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
 Frame = -2

Query: 417 SCSFNTL*TIGISRPSTLKTTISPTRTGSSG*LVKN---SKSPL*KAGSILPDSTTTIGL 247
           S S+NT  T      ST  T ISP+   +   LV +   S+S L  + +++P  +T+I L
Sbjct: 448 SVSYNTTLTPAPDETSTAATAISPSSVANMTTLVSSVNLSRSSL--STTLIPSISTSI-L 504

Query: 246 SLPVTTIKPFHIIK-AEDTI-IPKLNTWYMNCRLFIRRTSSNRLSNIV 109
           S   T I  F+  +    TI +  +N   ++    I  T+  R+++ +
Sbjct: 505 SYNTTVIATFNTTRLVTSTISLSTVNVSALSTTSSIESTTMARVASFI 552


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,428,486
Number of Sequences: 59808
Number of extensions: 466731
Number of successful extensions: 1421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1351
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)