Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F09
         (661 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         26   0.25 
AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    27   0.69 
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    27   0.69 
AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione S-tran...    27   0.69 
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    24   3.7  
CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative calcium/c...    24   3.7  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    23   8.5  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.5  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.8 bits (54), Expect(2) = 0.25
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 58  LKFXPVADSCRHHNHHRP 5
           L + P A +  HH+HH P
Sbjct: 146 LHYQPAAAAAMHHHHHHP 163



 Score = 20.6 bits (41), Expect(2) = 0.25
 Identities = 8/24 (33%), Positives = 9/24 (37%)
 Frame = -1

Query: 211 HQGRRHYHTKA*HLVHELPLVHSP 140
           H    H H    H+    P VH P
Sbjct: 118 HHQHHHQHPHLPHVQQHHPSVHHP 141


>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 414 CSFNTL*TIGISRPSTLKTTISPTRTGSS 328
           C+FNTL T+ + R +T   +I PT  GSS
Sbjct: 211 CTFNTLDTVYMFRNAT-APSIFPTEVGSS 238


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 414 CSFNTL*TIGISRPSTLKTTISPTRTGSS 328
           C+FNTL T+ + R +T   +I PT  GSS
Sbjct: 211 CTFNTLDTVYMFRNAT-APSIFPTEVGSS 238


>AF515523-1|AAM61890.1|  222|Anopheles gambiae glutathione
           S-transferase u2 protein.
          Length = 222

 Score = 26.6 bits (56), Expect = 0.69
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -2

Query: 270 DSTTTIGLSLPVTTIKPFHIIKAEDTIIPKLNTWYMNCRL 151
           ++ T   LSL  T     H    + T  P+LN WY +CR+
Sbjct: 154 ENLTIADLSLVPTIASAVHC-GLDLTNYPRLNAWYESCRV 192


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 482 SLCHQRYYCH--LWLRTLLCHCSFHVVSILCEQS 387
           SL   R +C   +WLR+  CH S   VS + + S
Sbjct: 5   SLLLFRQFCRDIVWLRSCSCHSSVCAVSFVMQCS 38


>CR954256-9|CAJ14150.1|  872|Anopheles gambiae putative
           calcium/calmodulin-dependentprotein kinase, CAKI
           protein.
          Length = 872

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 543 NPLARPTTSFLVSHSW 496
           NP++RPT + ++ H W
Sbjct: 241 NPISRPTITEVLDHPW 256


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 1   RPADGDCGDGNCRQQGKTSITKHCTA 78
           R   G C +G+C ++G ++I    TA
Sbjct: 495 RTPSGGCYEGDCTEKGGSAIAGVMTA 520


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 20/77 (25%), Positives = 39/77 (50%)
 Frame = +2

Query: 104  KLTMLESLFDDVRRMNKRQFMYQVLSFGMIVSSALMIWKGLMVVTGSESPIVVVLSGSME 283
            K   +  L+DDVR+    +FM     F +I      +++  M+  G ++ + +V   SM+
Sbjct: 1112 KRNEMRQLYDDVRKKRFTEFM---RGFHIITKKLKEMYQ--MITLGGDAELELV--DSMD 1164

Query: 284  PAFHRGDLLFLTNYPEE 334
            P F+ G ++F    P++
Sbjct: 1165 P-FNEG-IVFSVRPPKK 1179


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 740,322
Number of Sequences: 2352
Number of extensions: 15936
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 65650335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)