Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F08
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    27   1.4  
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    26   3.3  
SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces...    25   5.8  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.6  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.6  
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po...    25   7.6  
SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    25   7.6  

>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = -3

Query: 451 RTSQLM*LIYHPQVE---VYQYTTYDNTSDFYKNV 356
           R  Q+M ++ HP +     Y YTT DN+ + Y N+
Sbjct: 72  RELQIMRIMKHPNIVDLIAYYYTTGDNSDEVYLNL 106


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +3

Query: 177 LAVVMLHSLTIIFTDNRSRITLLDLQNNTDA*TQFHLSLLSVYGA 311
           LA++ LH L I++ D +    LLD + +    T F LS ++  GA
Sbjct: 201 LALIHLHKLGIVYRDLKPENCLLDAEGHI-LLTDFGLSKVAENGA 244


>SPBC17A3.05c |||DNAJ/DUF1977 DNAJB12 homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 403

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 141 FISAFPWSDITHINSEGRFHCFSHYXXP 58
           F+S F WSD T +N+   F     Y  P
Sbjct: 279 FLSNFSWSDSTSVNTRYSFQQNYKYTVP 306


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 421 HPQVEVYQYTTYDNTSDFYKNVYYFLTKRSKMLSYICA 308
           H   + Y YTT+D+  D   +  +  T   + L +IC+
Sbjct: 520 HSIRKTYGYTTHDDLGDDGDDTAHLTTPHYEPLRFICS 557


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 483 LTVFRTILIINGHLNLCN*FITHKSRFISTQHMTTL 376
           L VF +I +IN H NLC       S F+   H  TL
Sbjct: 38  LAVFPSIPLINTHSNLCLFSNFSHSCFLFCTHPDTL 73


>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1313

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -1

Query: 183 LQEERQCLSTQRMLFISAFPWSDITHINSEGRFHCFSHYXXP 58
           + E R   +    +F   FP   +  +N +   HC SH   P
Sbjct: 592 ISEHRAMCAFILSVFCRGFPQGQLACLNPQVLSHCLSHLNSP 633


>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = +2

Query: 89  LPSEFMCVISDQGKADIKSIL-WVERH--CRSSCSSNVA 196
           L S F C+++      I++ L W ER   C SSCSS+++
Sbjct: 411 LSSTFECMVNPLTNNKIQANLGWNERQRQCLSSCSSHLS 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,937
Number of Sequences: 5004
Number of extensions: 41721
Number of successful extensions: 106
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)