Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F08
         (561 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)                      30   1.5  
SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)               28   6.0  
SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)                  27   7.9  
SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7)                27   7.9  
SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_50352| Best HMM Match : BBE (HMM E-Value=0.72)
          Length = 344

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -3

Query: 457 YKRTSQLM*LIYHPQVEVYQYTTYDNT-SDFYKNVYYFLTKRSKMLSYICAPYTESNER 284
           Y  T  +M L       VY       T +   +   Y LT +S+M+ + C P T  NER
Sbjct: 82  YTLTGNIMMLTKLIYTAVYTLIVKTRTRTRIIRTAVYILTGKSRMIKFRCVPVTYFNER 140


>SB_1274| Best HMM Match : PARG_cat (HMM E-Value=2.5e-14)
          Length = 334

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -2

Query: 545 FYKYNLVYYYSLT 507
           +Y YNL+YYY+LT
Sbjct: 24  YYGYNLIYYYNLT 36


>SB_29121| Best HMM Match : Toxin_12 (HMM E-Value=8.7)
          Length = 497

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = -3

Query: 457 YKRTSQLM*LIYHPQVEVYQYTTYDNTSDFYKNVYYFLTKRSKMLSYICAPYTESNER*N 278
           Y RTSQ   L++     VY   T  N S  +  VYY  T +++ L  I    T  N+   
Sbjct: 414 YMRTSQNQSLVF-----VYYLRTSQNQSLVF--VYYMRTSQNQSLVCIYYMRTSQNQSLV 466

Query: 277 CVY 269
           CVY
Sbjct: 467 CVY 469


>SB_23| Best HMM Match : ABC2_membrane (HMM E-Value=1.7)
          Length = 231

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/52 (25%), Positives = 31/52 (59%)
 Frame = +2

Query: 359 IFIKIASVVICCVLINLDLWVIN*LHKLRCPFIIKIVLNTVSLIAFSYIMSV 514
           I I IAS+++  +   + + + + +H   C FI+ IV+ ++ +IA + ++ +
Sbjct: 129 IVIAIASIIVIAIASIIVIAIASIIHYCYCSFIV-IVIASIIVIAIASVIVI 179


>SB_32138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 467 VLNTVSLIAFSYIMSVNNNKLG 532
           V+NTV L +  Y MS+N N  G
Sbjct: 9   VINTVKLCSLDYRMSINQNNTG 30


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,357,122
Number of Sequences: 59808
Number of extensions: 296140
Number of successful extensions: 779
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1312894764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)