Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F07
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    33   0.052
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    33   0.052
SPAC57A10.09c |||High-mobility group non-histone chromatin prote...    31   0.21 
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.6  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    26   6.0  
SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces po...    26   6.0  

>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 66  AIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKS 221
           ++R+      +  RP +A +L+     A L   NP ++ ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 32.7 bits (71), Expect = 0.052
 Identities = 13/52 (25%), Positives = 29/52 (55%)
 Frame = +3

Query: 66  AIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKS 221
           ++R+      +  RP +A +L+     A L   NP ++ ++++K  GE+W++
Sbjct: 92  SLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNPSINNSQVSKLVGEMWRN 143


>SPAC57A10.09c |||High-mobility group non-histone chromatin
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 108

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 84  KMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSM 224
           K P  P R +SA M +    R ++K++NP  +  ++    G+ WK +
Sbjct: 11  KDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKEL 57


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 33  CPSSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSV 182
           C S K   +FF    K+     P  PLSA+ +W+ SA   ++  N   ++
Sbjct: 501 CSSCKYPFQFFI--NKLPFYQSPSLPLSATYVWIASALLSVQPGNGSFNI 548


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/57 (28%), Positives = 28/57 (49%)
 Frame = +3

Query: 15  PSPVWLCPSSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVT 185
           P  VW   S K+++    I +K+K+P    + L+ ++  L   R    S NP  S++
Sbjct: 745 PEEVWQVSSLKVVNLSSNILEKIKLPVATSKKLTRTISQLKIMRT--LSGNPVSSLS 799


>SPBC25H2.14 |mug16||UNC-50 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 268 SLALAAFCSHSVLSFIDFQISP 203
           +L L A C +S L+FI +QI P
Sbjct: 173 TLYLVALCYYSYLTFIGYQILP 194


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,326
Number of Sequences: 5004
Number of extensions: 33908
Number of successful extensions: 87
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)