Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F07
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0562 + 4907937-4907990,4908890-4909075,4909180-4909285,490... 47 1e-05
01_01_0605 + 4497308-4497472,4497719-4497904,4498898-4499003,449... 45 5e-05
09_06_0203 + 21555747-21555805,21555862-21555939,21556034-215560... 44 1e-04
08_01_0008 - 65366-65497,65588-65759,65846-65972,66058-66140,662... 44 2e-04
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 40 0.002
04_04_0616 - 26638438-26638638,26638890-26638971,26639054-266391... 29 2.7
09_01_0004 - 133130-133897 29 3.5
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 29 4.7
>05_01_0562 +
4907937-4907990,4908890-4909075,4909180-4909285,
4909377-4909513,4909989-4910072,4910157-4910248,
4910358-4910466,4910554-4910640,4910737-4910829,
4911384-4911581,4911659-4911810,4911910-4912060,
4912174-4912272,4912362-4912535,4912680-4912758,
4912858-4912979
Length = 640
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/50 (46%), Positives = 31/50 (62%)
Frame = +3
Query: 75 QKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSM 224
+K K P P R ++ M + + RA LK+ NP L+ TEIAKK GE W+ M
Sbjct: 550 KKKKDPNAPKRAIAPFMYFSKAERANLKNSNPELATTEIAKKLGERWQKM 599
>01_01_0605 +
4497308-4497472,4497719-4497904,4498898-4499003,
4499062-4499216,4499341-4499424,4499498-4499589,
4499729-4499837,4499944-4500030,4500153-4500245,
4501144-4501341,4501481-4501632,4501724-4501874,
4501975-4502073,4502159-4502326,4502624-4502702,
4502870-4503000
Length = 684
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/50 (42%), Positives = 30/50 (60%)
Frame = +3
Query: 75 QKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSM 224
+K K P P R ++ M + + R +K+ NP L TEIAKK GE+W+ M
Sbjct: 591 KKKKDPNAPKRAMTPFMYFSMAERGNMKNNNPDLPTTEIAKKLGEMWQKM 640
>09_06_0203 +
21555747-21555805,21555862-21555939,21556034-21556091,
21556191-21556235,21556514-21556549,21556855-21556935,
21557016-21557087,21557184-21557195
Length = 146
Score = 44.0 bits (99), Expect = 1e-04
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 27 WLCPSSKILSKFFAIRQKV-KMPAKPXRPLSASMLWLNSARAQLKSENPGLS-VTEIAKK 200
W C ++ + + K K P KP RP SA +++ R K ++P + V+ I K
Sbjct: 10 WFCACARGWFRLSVRKTKAEKDPNKPKRPPSAFFVFMEQFRKDYKEKHPNVKQVSVIGKA 69
Query: 201 GGEIWKSMKD 230
GG+ WKSM D
Sbjct: 70 GGDKWKSMTD 79
>08_01_0008 -
65366-65497,65588-65759,65846-65972,66058-66140,
66232-66329
Length = 203
Score = 43.6 bits (98), Expect = 2e-04
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Frame = +3
Query: 96 KPXRPLSASMLWLNSARAQLKSENP-GLSVTEIAKKGGEIWKSMKDK 233
K RP +A L+++ R + K+E+P SV+ +AK+GGE WKSM D+
Sbjct: 91 KGKRPPTAFFLFMSDFRKEYKAEHPDNKSVSAVAKEGGERWKSMSDE 137
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/63 (36%), Positives = 36/63 (57%)
Frame = +3
Query: 42 SKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKS 221
+K SK ++K K P+KP +P+SA ++ RA L +E +V EI + GE WK+
Sbjct: 266 NKKASKKGKKKKKEKDPSKPKQPMSAYFVYTQQRRAALVAEKK--NVPEIGRITGEEWKA 323
Query: 222 MKD 230
M +
Sbjct: 324 MSE 326
Score = 36.7 bits (81), Expect = 0.018
Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Frame = +3
Query: 90 PAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSM--KDKTEWXXXXXXX 263
P +P +P S+ +L+ AR QL E PG++ + + WK + +K W
Sbjct: 411 PNRPKKPASSFLLFSKEARRQLAEERPGVASSTLTALVSVKWKELGEAEKQAWNGKAAEA 470
Query: 264 XXXXXXDLESY 296
D+E Y
Sbjct: 471 MAAYKRDMEEY 481
Score = 28.7 bits (61), Expect = 4.7
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 105 RPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSM 224
+P A +LW ++K E+P E++ G WK++
Sbjct: 159 KPCPAYVLWCKDQWNEIKKESPDADFKEVSNALGAKWKAL 198
>04_04_0616 -
26638438-26638638,26638890-26638971,26639054-26639141,
26639222-26639278,26641334-26641526
Length = 206
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +3
Query: 51 LSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKD 230
L K + +K K K + LSA + W N+ +A ++++ + ++ KK E + MK+
Sbjct: 98 LIKAWEENEKTKAENKASKKLSAILSWENTKKANIEAQLKKIE-EQLEKKKAEYAEKMKN 156
Query: 231 K 233
K
Sbjct: 157 K 157
>09_01_0004 - 133130-133897
Length = 255
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 293 LQCQWRWWRRGRKEGSKTREKG 358
L+C+ RWWRR R+ G G
Sbjct: 93 LRCRERWWRRRRRTGDAAEAAG 114
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Frame = +2
Query: 293 LQCQWRWWR-----RGRKEGSKTREKG 358
LQC+ RWWR RGR G + R G
Sbjct: 21 LQCRERWWRRRPVHRGRGRGGRRRRSG 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,447,502
Number of Sequences: 37544
Number of extensions: 225743
Number of successful extensions: 695
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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