Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F07
(699 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 49 3e-06
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 48 6e-06
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 47 1e-05
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 47 1e-05
Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical pr... 38 0.005
U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian ... 38 0.005
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 36 0.028
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 36 0.028
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 36 0.028
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 36 0.028
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 36 0.028
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 36 0.037
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 35 0.064
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 35 0.064
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 35 0.064
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 35 0.064
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 31 0.60
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 75 QKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMK--DKTEWXX 248
+K K P P R SA M W ++R +LK + G SV ++AKKGG WK+M DK +W
Sbjct: 548 KKDKDPNAPKRATSAYMQWFLASRNELKED--GDSVADVAKKGGAKWKTMSSDDKKKWEE 605
Query: 249 XXXXXXXXXXXDLESYNAN 305
+++ Y N
Sbjct: 606 KAEEDKSRYEKEMKEYRKN 624
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 48.0 bits (109), Expect = 6e-06
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 75 QKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMK--DKTEWXX 248
+K K P +P R +A ++W N+ R +K + G ++ ++AKK G WKSM DK EW
Sbjct: 553 KKTKDPNEPKRATTAYIIWFNANRNSMKED--GDTLGDVAKKAGAKWKSMSADDKKEWND 610
Query: 249 XXXXXXXXXXXDLESYNAN 305
+++ Y N
Sbjct: 611 KAAQDKARYEAEMKEYKKN 629
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 78 KVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTEWXXXXX 257
K K P P R +SA W+ R ++K PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 258 XXXXXXXXDLESY 296
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/73 (30%), Positives = 33/73 (45%)
Frame = +3
Query: 78 KVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTEWXXXXX 257
K K P P R +SA W+ R ++K PG+ V ++AK G W + DK+ W
Sbjct: 21 KAKDPNAPKRAMSAFFFWMQENRERIKK--PGMGVADVAKAAGVEWGKLTDKSRWEKKAA 78
Query: 258 XXXXXXXXDLESY 296
D+ +Y
Sbjct: 79 DDKKRYEVDIANY 91
>Z69792-4|CAA93665.1| 212|Caenorhabditis elegans Hypothetical
protein F40E10.2 protein.
Length = 212
Score = 38.3 bits (85), Expect = 0.005
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +3
Query: 105 RPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDK 233
RP++A M+W R ++ +NP + +EI+K+ G WK + ++
Sbjct: 50 RPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKQLSEQ 92
>U38377-1|AAA79747.2| 283|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 2, isoform a protein.
Length = 283
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = +3
Query: 105 RPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDK 233
RP++A M+W R ++ ENP + +EI+K+ G WK + ++
Sbjct: 62 RPMNAFMVWSRGQRKKMALENPKMHNSEISKRLGTEWKMLSEQ 104
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 39 SSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWK 218
++ + S+ R + K P RP++A M+W R ++ P + + I+K G WK
Sbjct: 158 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 217
Query: 219 SMKD 230
M +
Sbjct: 218 GMSN 221
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 39 SSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWK 218
++ + S+ R + K P RP++A M+W R ++ P + + I+K G WK
Sbjct: 155 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 214
Query: 219 SMKD 230
M +
Sbjct: 215 GMSN 218
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 39 SSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWK 218
++ + S+ R + K P RP++A M+W R ++ P + + I+K G WK
Sbjct: 261 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 320
Query: 219 SMKD 230
M +
Sbjct: 321 GMSN 324
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 39 SSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWK 218
++ + S+ R + K P RP++A M+W R ++ P + + I+K G WK
Sbjct: 309 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 368
Query: 219 SMKD 230
M +
Sbjct: 369 GMSN 372
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 35.9 bits (79), Expect = 0.028
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +3
Query: 39 SSKILSKFFAIRQKVKMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWK 218
++ + S+ R + K P RP++A M+W R ++ P + + I+K G WK
Sbjct: 309 NTSVTSEVATPRPQAKSPNHIKRPMNAFMVWARDERRKILKAYPDMHNSNISKILGSRWK 368
Query: 219 SMKD 230
M +
Sbjct: 369 GMSN 372
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 35.5 bits (78), Expect = 0.037
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 105 RPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDK 233
RP++A M+W R ++ P + EI+K+ G W+S+ D+
Sbjct: 95 RPMNAFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDE 137
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 84 KMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTE 239
K P P R LSA + R ++++ +P V ++A++ G++WK + +T+
Sbjct: 129 KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 180
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 156 KSENPGLSVTEIAKKGGEIWKSMKD 230
K N + VTEI+KK E WK+M D
Sbjct: 65 KYPNENVQVTEISKKCSEKWKTMVD 89
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 84 KMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTE 239
K P P R LSA + R ++++ +P V ++A++ G++WK + +T+
Sbjct: 128 KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 179
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 156 KSENPGLSVTEIAKKGGEIWKSMKD 230
K N + VTEI+KK E WK+M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 84 KMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTE 239
K P P R LSA + R ++++ +P V ++A++ G++WK + +T+
Sbjct: 130 KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 156 KSENPGLSVTEIAKKGGEIWKSMKD 230
K N + VTEI+KK E WK+M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 84 KMPAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKDKTE 239
K P P R LSA + R ++++ +P V ++A++ G++WK + +T+
Sbjct: 130 KDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVPQETK 181
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +3
Query: 156 KSENPGLSVTEIAKKGGEIWKSMKD 230
K N + VTEI+KK E WK+M D
Sbjct: 66 KYPNENVQVTEISKKCSEKWKTMVD 90
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 31.5 bits (68), Expect = 0.60
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 90 PAKPXRPLSASMLWLNSARAQLKSENPGLSVTEIAKKGGEIWKSMKD 230
P P RPL M + ++++ENP + +I K G+ W + D
Sbjct: 23 PKVPERPLQPYMRYSRKMWPKVRAENPEAQLWDIGKMIGKYWLDLPD 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,769,039
Number of Sequences: 27780
Number of extensions: 199582
Number of successful extensions: 547
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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