Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F06
(649 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 33 0.035
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 29 0.76
SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 1.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 27 2.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.3
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 27 3.1
SPAC1805.05 |cki3||serine/threonine protein kinase Cki3|Schizosa... 27 3.1
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 4.1
SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces ... 26 5.4
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.1
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.1
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 25 7.1
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc... 25 9.4
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 25 9.4
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 25 9.4
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 33.1 bits (72), Expect = 0.035
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = +3
Query: 156 YVPQQENEV--YYPQQPENPIFSPTQATELADP 248
Y+P+ V YYPQQP P+F ++ TEL DP
Sbjct: 511 YIPKDPYPVPHYYPQQPL-PLFDSSEMTELVDP 542
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 28.7 bits (61), Expect = 0.76
Identities = 18/59 (30%), Positives = 23/59 (38%)
Frame = +1
Query: 436 SHHPECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKN 612
SHHP +P C P + P PQ+P+H V SP P P + N
Sbjct: 136 SHHPPLHNPLPVSCQ------PVLRPPPVPQVPSHWYPVSLPSPNLPHQPISKPPVIPN 188
>SPBC26H8.13c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 27.5 bits (58), Expect = 1.8
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = -3
Query: 551 TCAVCVGNCGRASGTTCGPTSPSEEHWE 468
TCA+C+ C + C S E +E
Sbjct: 83 TCAICIRQCHKCESNVCSMCSKQERTFE 110
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.1 bits (57), Expect = 2.3
Identities = 24/89 (26%), Positives = 35/89 (39%)
Frame = +3
Query: 12 SPILPPTPVAVGGGLAAFMSRQPEAAQAPSTGQVSIPDRRRQXLADTSYVPQQENEVYYP 191
S I+ PT V+ G +++F S + T +S +T+ Q V Y
Sbjct: 514 SSIIVPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNE-----ETTTTTQ----VTYT 564
Query: 192 QQPENPIFSPTQATELADPTEKIELYSTT 278
PE + T T + P E I STT
Sbjct: 565 TSPEETTTTMTTTTCSSRPEETISTVSTT 593
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 15 PILPPTPVAVGGGLAAFMSRQPEAAQAPSTGQVSIPDRRRQXLAD 149
P PP P AV G + + + P+A P + S+ + ++ L +
Sbjct: 776 PPPPPPPPAVSAGGSRYYAPAPQAEPEPKIDETSLTEEQKIQLEE 820
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 76 SPKPHRRLQRARCPYLIVAAXPLPIPATYRNKK 174
SP P+ R+ + PY I P T +NKK
Sbjct: 364 SPDPNLRIDQVAVPYRIAKILTFPERVTTQNKK 396
>SPAC1805.05 |cki3||serine/threonine protein kinase
Cki3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 439
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 6/52 (11%)
Frame = +1
Query: 484 DGEVGPQVVPEARPQLPTHTAQ------VEEASPQATPPPTVDPDRMKNCKP 621
DG G P+ + Q T +AQ VE+ +PQ T P VD + P
Sbjct: 366 DGIPGKAASPQVQQQQQTSSAQQQQPQRVEQPAPQTTQPTQVDTQQAAKPAP 417
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1778
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -3
Query: 317 SGRRFGSLGNRYQSGGVQFDLFSGVSQFGR 228
+G FG+ N +GG F + SG FG+
Sbjct: 64 NGGLFGNRNNTTTTGGTGFGMSSGTGMFGQ 93
>SPAC7D4.04 |taf1||Taz1 interacting factor 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 528 LRSGLRDHLRPYLPIRRTLGRTRMWALWVVRS 433
LR+ + L +LP RRT G ++WA + V +
Sbjct: 838 LRNFKQGSLVLFLPTRRTAGNKKVWAAFNVNA 869
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +1
Query: 76 SPKPHRRLQRARCPYLIVAAXPLPIPATYRNKKTKSITLSNQRTRSS 216
S H + + +++ +P+P YR + TLSN++T S
Sbjct: 45 SQDTHSCASKQDAVFQLLSETKIPVPNRYRKISHRLSTLSNKKTLKS 91
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/43 (25%), Positives = 22/43 (51%)
Frame = +3
Query: 150 TSYVPQQENEVYYPQQPENPIFSPTQATELADPTEKIELYSTT 278
TS+ PQ ++ +Y + + S T+ + + T K++ S T
Sbjct: 720 TSFNPQHDSRIYNHNGKQKLVISFTETMDCNEITSKLQFSSKT 762
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +3
Query: 168 QENEVYYPQQPENPIFSPTQATELADPTE 254
+ N YPQ + P+ P A DP +
Sbjct: 155 EHNGPVYPQDQQGPVIIPNSAISSTDPDD 183
>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 512
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = -1
Query: 127 RSGMDTWPVEGACAASGWRDMNAARPPPTA 38
+SG+D++ + + ASGW ++ + P A
Sbjct: 271 KSGLDSFDDQSSVEASGWTEVGKNKKPVIA 300
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +3
Query: 24 PPTPVAVGGGLAAFMSRQPEAAQAP--STGQVSIPDRRRQXL 143
PPTP A LAA S +P A P + GQ S RR+ +
Sbjct: 428 PPTPHASASKLAAKPSVKPAGAYRPPGARGQNSTFSYRREEI 469
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 25.0 bits (52), Expect = 9.4
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Frame = +3
Query: 72 RQPEAAQAPSTGQVSIPDRRRQXLADTSYVPQQENEVYYPQQ--PENPIFSPTQATELAD 245
R P + APS +S L + P + E Y + P NP F Q+T
Sbjct: 343 RGPISHYAPSNSTLSSTPPSTLQLTFVRFPPPMQVENYASSRNYPANPFFLQNQSTSQQQ 402
Query: 246 PTEKIELYSTT 278
P E+ TT
Sbjct: 403 P-ERSSAVKTT 412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,970
Number of Sequences: 5004
Number of extensions: 45749
Number of successful extensions: 166
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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