Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F06
(649 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.81
SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67) 31 0.81
SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 30 1.4
SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064) 29 3.3
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 29 3.3
SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 28 5.7
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 5.7
SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085) 28 5.7
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027) 28 7.5
SB_58202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_45417| Best HMM Match : Homeobox (HMM E-Value=5.1e-09) 27 9.9
SB_41851| Best HMM Match : Pkinase (HMM E-Value=0) 27 9.9
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 27 9.9
SB_11049| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_54062| Best HMM Match : WSC (HMM E-Value=4.6e-06) 27 9.9
SB_49184| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3) 27 9.9
SB_17558| Best HMM Match : Homeobox (HMM E-Value=2.9e-21) 27 9.9
SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2) 27 9.9
>SB_31799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 31.1 bits (67), Expect = 0.81
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 34 QSLWAVVWPRSCPASPKPHRRLQRARCPYLIV--AAXPLPIPATYRN 168
+++W + W S P P+ HRR + R + + P P T +N
Sbjct: 701 RTVWTLAWTVSTPLIPQEHRRTEHRRTVWTLAWYGVHPTHTPGTQKN 747
>SB_29099| Best HMM Match : DUF1333 (HMM E-Value=0.67)
Length = 237
Score = 31.1 bits (67), Expect = 0.81
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 496 GPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNC 615
GP+++P++ P P EE SP++TP TV R C
Sbjct: 197 GPEMIPKSTPTDPRTRNDTEE-SPKSTPGITVMESRRNTC 235
>SB_34512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1080
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/74 (37%), Positives = 36/74 (48%)
Frame = +3
Query: 36 VAVGGGLAAFMSRQPEAAQAPSTGQVSIPDRRRQXLADTSYVPQQENEVYYPQQPENPIF 215
V G +A Q E A A S V +P+R Q + S P+Q N+V PQ E P
Sbjct: 612 VDTAGTASADTRCQHELAVADSP-VVCLPER--QTHSGESATPEQTNQVVEPQM-EEPQG 667
Query: 216 SPTQATELADPTEK 257
S T A LA+P E+
Sbjct: 668 S-TSAQHLAEPDEQ 680
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -3
Query: 581 GGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEE 465
G CG +C+ C G CG ++G C P ++ E
Sbjct: 97 GRYYCGRQVLSCSCCDGFCGTSNGCNCPPCQKLDQEERE 135
>SB_37864| Best HMM Match : Extensin_2 (HMM E-Value=0.064)
Length = 1230
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/59 (28%), Positives = 26/59 (44%)
Frame = +1
Query: 445 PECPHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRMKNCKP 621
PE +SQ + + P P ARPQ P ++ SP P PT+ +++ P
Sbjct: 864 PEPASQMNSQFNDQPNLAPYE-PFARPQQPPAPMPPQQQSPYQPPAPTMQQPQLQAFAP 921
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 29.1 bits (62), Expect = 3.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 454 PHPRSSQCSS-DGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPDRM 606
P S C+ P+V+ R LPT+T+ E SP+ TP PT R+
Sbjct: 469 PREHQSPCTPVPAYTTPRVLHSPRTPLPTYTSPREHHSPR-TPLPTYTSPRV 519
>SB_59802| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3213
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 15 PILPPTPVAVGGGLAAFMSRQPEAAQAPSTGQVSIPDRRRQXLADTSYVPQQENEVYYPQ 194
P+ PP PV V + R P +AP IPD R + + S + ++ P
Sbjct: 3127 PVAPPPPVPVSTEVEPM--RPPRKMRAPPPPSTRIPDVRYRSSSQDSRDSDELPDILPPP 3184
Query: 195 QP 200
+P
Sbjct: 3185 KP 3186
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 439 HHPECPHPRSSQCSSDGEVGPQVVPEAR--PQLPTH 540
+HP CP P +C E+ P+++PE + Q+P H
Sbjct: 319 NHP-CPLPCFEECKPCTELLPKIIPECQHEQQVPCH 353
>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1468
Score = 28.3 bits (60), Expect = 5.7
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 511 PEARPQLPTHTAQVEEASPQATPPPTVDPDRMK 609
P+ + P T + PQ TP PT +P R K
Sbjct: 357 PKHTTEPPRTTPEPTTEPPQTTPEPTTEPSRTK 389
>SB_15409| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 419
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 605 IRSGSTVGGGVA-CGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSG 444
++ T G G CG TC G CG+ G TCG + +GCG G
Sbjct: 223 VKGCGTCGKGCGTCGKRCRTCYAGCGTCGKGWG-TCGKGCRT----SGKGCGTCG 272
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Frame = -3
Query: 590 TVGGGVA-CGDASSTCAVCVGNCGRASGTTCG 498
T G G CG TC G CG+ G TCG
Sbjct: 263 TSGKGCGTCGKGCGTCGKGCGTCGKGCG-TCG 293
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 1/60 (1%)
Frame = +1
Query: 58 PRSC-PASPKPHRRLQRARCPYLIVAAXPLPIPATYRNKKTKSITLSNQRTRSSAPLKRP 234
PR+ P + KP + P AA P+P T+ T N T A K P
Sbjct: 1802 PRTTTPETTKPRTTTPKTTTPKKTTAAKKAPLPVTHATTSHAPSTTENPTTARPATTKAP 1861
>SB_40118| Best HMM Match : DREPP (HMM E-Value=0.085)
Length = 512
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 433 TSHHPECPHPRSSQCSSDGEVGPQVVPEARPQL 531
TS HP+ PHPRS GE P V +A ++
Sbjct: 287 TSSHPQ-PHPRSRSFDYSGEGRPSVGSDASGEI 318
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 28.3 bits (60), Expect = 5.7
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = +1
Query: 76 SPKPHRRLQRARCPYLIVAAXPLPIPATYRNKKTKSITLSNQRTRS---SAPLKRPNWLT 246
SP P RR + + P P P P R +K+ S + +R RS S P R + L
Sbjct: 892 SPPPRRRRRDSYSPSRRRRDSPTPSPPPRRRRKSPSPSPPRRRRRSPSNSPPPMRSSPLP 951
Query: 247 PLKRSNCT 270
P +R +
Sbjct: 952 PPQRKRAS 959
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/54 (27%), Positives = 19/54 (35%)
Frame = -3
Query: 596 GSTVGGGVACGDASSTCAVCVGNCGRASGTTCGPTSPSEEHWEERGCGHSGWCE 435
G G G G+ ++ G SGTT G + E G SG E
Sbjct: 616 GVNTGSGTTTGEVNTGSGTTTGGMNTGSGTTTGGVNTGSGTTSESGTTTSGTTE 669
>SB_19793| Best HMM Match : TSP_1 (HMM E-Value=0.0027)
Length = 384
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Frame = -3
Query: 575 VACGDASSTCAVCVGNCGR---ASGTTCGPTSPSEEHWEERGCGHSGWC 438
+ G C+V GNCG G++C T + CGH WC
Sbjct: 59 IVYGQEYKLCSVTTGNCGTLFCMRGSSCVNTR-GMPPVDGTPCGHRKWC 106
>SB_58202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 HVPPARSRTGAFNGPGVHT*SSPPXPCRYQLRTATRKRSLLPSATR-EPDLQPHSSD 232
HVPPA T + P H + P P T++R + +PS P Q H++D
Sbjct: 43 HVPPAPLLTYSNTKPLSHVDCTAPAPVFPSYLTSSRLATGIPSPWMCAPSSQTHTAD 99
>SB_45417| Best HMM Match : Homeobox (HMM E-Value=5.1e-09)
Length = 216
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 HVPPARSRTGAFNGPGVHT*SSPPXPCRYQLRTATRKRSLLPSATR-EPDLQPHSSD 232
HVPPA T + P H + P P T++R + +PS P Q H++D
Sbjct: 140 HVPPAPLLTYSNTKPLSHVDCTAPAPVFPSYLTSSRLATGIPSPWMCAPSSQTHTAD 196
>SB_41851| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 967
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 6 GRSPILPPTPVAVGGGLAAFMSRQPEAAQAPSTGQVSI---PDRRRQXLADTSYVPQQEN 176
G SP PP V +GG + + AA A + ++ P + R D + P+++
Sbjct: 529 GESPRFPPVKVVMGGKCQQIIEEEEAAALAKAMELSALQRGPQKIRSLQPDAN-DPEEDE 587
Query: 177 EVYYPQQPEN 206
V QPE+
Sbjct: 588 MVIVYTQPES 597
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 27.5 bits (58), Expect = 9.9
Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)
Frame = +3
Query: 12 SPILPPTPV--AVGGGLAAFMSRQPEAAQAPSTGQVSIPDRRRQXLADTS-YVPQQENEV 182
+P +P TP+ A S P AP + P LA + Y+P +
Sbjct: 244 NPPMPETPLPPATPNPFIPPASPNPSIPPAPPNPSIPAPPNPSIPLAPPNPYIPPAPPNL 303
Query: 183 YYPQQPENPIFSP 221
+ P P NP P
Sbjct: 304 FIPSAPPNPHIPP 316
>SB_11049| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 HVPPARSRTGAFNGPGVHT*SSPPXPCRYQLRTATRKRSLLPSATR-EPDLQPHSSD 232
HVPPA T + P H + P P T++R + +PS P Q H++D
Sbjct: 43 HVPPAPLLTYSNTKPLSHVDCTAPAPVFPSYLTSSRLATGIPSPWMCAPSSQTHTAD 99
>SB_54062| Best HMM Match : WSC (HMM E-Value=4.6e-06)
Length = 185
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 560 ASSTCAVCVGNCGRASGTTCGPTSPSEEH 474
A TC V G G+A+ C P S EH
Sbjct: 94 AVCTCGVSFGRYGKANPKDCNPKCSSGEH 122
>SB_49184| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 HVPPARSRTGAFNGPGVHT*SSPPXPCRYQLRTATRKRSLLPSATR-EPDLQPHSSD 232
HVPPA T + P H + P P T++R + +PS P Q H++D
Sbjct: 43 HVPPAPLLTYSNTKPLSHVDCTAPAPVFPSYLTSSRLATGIPSPWMCAPSSQTHTAD 99
>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
Length = 515
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 516 LRDHLRPYLPIRRTLGRTRMWALWVVRSHLLPRLPQEASS--PVSSY*RQ 373
LR H +P LP R L +++R H P+LP A+ V SY R+
Sbjct: 424 LRQHRKPKLPFRANL--ALKVTSYILRQHRKPKLPFRANEALKVLSYTRR 471
>SB_17558| Best HMM Match : Homeobox (HMM E-Value=2.9e-21)
Length = 193
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 65 HVPPARSRTGAFNGPGVHT*SSPPXPCRYQLRTATRKRSLLPSATR-EPDLQPHSSD 232
HVPPA T + P H + P P T++R + +PS P Q H++D
Sbjct: 117 HVPPAPLLTYSNTKPLSHVDCTAPAPVFPSYLTSSRLATGIPSPWMCAPSSQTHTAD 173
>SB_6669| Best HMM Match : zf-C4_Topoisom (HMM E-Value=1.2)
Length = 523
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Frame = +1
Query: 433 TSHHPEC-PHPRSSQCSSDGEVGPQVVPEARPQLPTHTAQVEEASPQATPPPTVDPD 600
T HH C P + + E+G Q P R L T QV PP VD +
Sbjct: 149 TYHHYPCIPAEKPIEEWRPSELGTQTRPSRRRYLATRPCQVVCCGDYGQVPPWVDKE 205
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,220,247
Number of Sequences: 59808
Number of extensions: 405277
Number of successful extensions: 1788
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1768
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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