Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F05
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0829 - 21792924-21793247,21793332-21793482,21793577-217938...    31   0.86 
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    31   1.5  
01_01_0083 + 631196-631675                                             30   2.6  
06_01_0881 + 6754600-6754681,6754742-6755284,6755461-6755523,675...    29   3.5  
05_04_0206 + 19034259-19035462,19036870-19037045,19037752-190379...    29   3.5  
12_02_0671 + 21725663-21726046                                         29   6.0  
11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101     28   8.0  

>07_03_0829 -
           21792924-21793247,21793332-21793482,21793577-21793811,
           21793900-21794110,21794218-21794435,21794536-21794671,
           21796732-21797517
          Length = 686

 Score = 31.5 bits (68), Expect = 0.86
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +2

Query: 137 ASAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSF 262
           A  GF+W +   P + +  W  +Q    P  +P   +F F F
Sbjct: 209 APEGFIWYNGTSPVYRNGPWDGLQFSGEPEMEPNNTSFRFEF 250


>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = -1

Query: 439 FYLLGLALRFFGI--LSKLFFDHFPIDVCNHSSLPSIAAHVDAAIGLSGLWFSFLNVVRR 266
           F LLG + + FG+  L + F+D  P+++C+     S++  +      SG+  S ++ V R
Sbjct: 556 FVLLGTS-KVFGLIGLEEFFYDQVPVELCSVGLAVSLSV-LGVGSYASGVLVSAIDWVTR 613

Query: 265 GERKS 251
           GE +S
Sbjct: 614 GEGES 618


>01_01_0083 + 631196-631675
          Length = 159

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = +2

Query: 110 LFMLSLITIASAGFVWQDDNFPGFPSDMWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKT 289
           + + S +   +AG  +  D  P +P  + P   + T  P  P  P+  +S+P P +    
Sbjct: 9   ILVFSALVALAAGDTYPAD-CP-YPCLLPPPTPVTTDCPPPPSTPSSGYSYPPPSSSSSN 66

Query: 290 KPQPGQTYSGVYVSSNGGKG 349
            P    +Y        GG G
Sbjct: 67  TPPSSSSYWNYPPPQGGGGG 86


>06_01_0881 +
           6754600-6754681,6754742-6755284,6755461-6755523,
           6755653-6755666
          Length = 233

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 173 PGFPS-DMWPSIQIPTIPPFDPKIPNFAFS 259
           PG P     P+IQIP +PP  P +P+ + +
Sbjct: 66  PGLPQLQPLPTIQIPELPPLPPLLPSVSIT 95


>05_04_0206 +
           19034259-19035462,19036870-19037045,19037752-19037975,
           19038133-19038914,19039337-19039494
          Length = 847

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +2

Query: 191 MWPSIQIPTIPPFDPKIPNFAFSFPSPDNIKKTK--PQPGQT 310
           M P   I T+PP  P +P F+   PSP  I ++K  P P QT
Sbjct: 119 MPPPPPIDTLPPPPPPLPEFS---PSPAKIHRSKSMPLPPQT 157


>12_02_0671 + 21725663-21726046
          Length = 127

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 276 LSGEGNEKAKFGILGSNG---GIVGICIEGHISLGNPGKLSS 160
           L+G G+   + G+L + G   G VG C+EG    G  G+L S
Sbjct: 27  LAGGGDRHLQLGMLSTGGECRGTVGECLEGGDVDGEEGELGS 68


>11_04_0374 + 16923063-16923176,16923214-16923363,16923547-16924101
          Length = 272

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -1

Query: 340 SIAAHVDAAIGLSGLWFSFLNVVRRGERKSKVRNFGIEWRNRWDLYRGP-HIAWESRKVI 164
           S+ ++  + I ++    S  ++     R SK     ++W +R  + R P H+AW  RK I
Sbjct: 123 SLISYTSSPISVADAQSSIKSIAATSSRLSKRNQRVVKWVSRIRIARRPVHLAWR-RKDI 181

Query: 163 VL 158
           VL
Sbjct: 182 VL 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,248,444
Number of Sequences: 37544
Number of extensions: 423486
Number of successful extensions: 1040
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)