Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_F05
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27219| Best HMM Match : Cad (HMM E-Value=4) 33 0.29
SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0) 31 1.5
SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053) 29 6.1
SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14) 28 8.1
SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35) 28 8.1
>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
Length = 297
Score = 33.1 bits (72), Expect = 0.29
Identities = 25/95 (26%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Frame = +3
Query: 555 NLNVI*YSLNVVFP-SFFYRCIT*HIQNPHN*LIIFLFYQLQVFFNV-IYYKIQMFFTSA 728
++NV YS+NV + + +Y + N + I ++Y + V+++V +YY + ++++
Sbjct: 77 SINVY-YSVNVYYSVNVYYSVNVYYSVNVY--YSINVYYSVNVYYSVNVYYSVNVYYSVN 133
Query: 729 LYRKINVI--VXIFIKLNS*FHSK*QSXSYETDLN 827
+Y +NV V ++ +N ++S+ +S Y DLN
Sbjct: 134 VYYSVNVYYSVTVYYSINV-YYSRFKSNPY--DLN 165
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/44 (27%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVI--VXIFIKLN 776
I ++Y + V++++ +YY I ++++ +Y INV V ++ +N
Sbjct: 30 INVYYSVNVYYSIDVYYSIDVYYSVTVYYSINVYYSVNVYYSIN 73
Score = 30.3 bits (65), Expect = 2.0
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
I ++Y + V+++V +YY I ++++ +Y INV I
Sbjct: 42 IDVYYSIDVYYSVTVYYSINVYYSVNVYYSINVYYSI 78
Score = 29.5 bits (63), Expect = 3.5
Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
+ ++Y + V+++V +YY I ++++ +Y +NV +
Sbjct: 54 VTVYYSINVYYSVNVYYSINVYYSINVYYSVNVYYSV 90
Score = 29.5 bits (63), Expect = 3.5
Identities = 10/37 (27%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
I ++Y + V+++V +YY + ++++ +Y +NV I
Sbjct: 72 INVYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSI 108
Score = 28.7 bits (61), Expect = 6.1
Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
I ++Y + V++++ +YY I ++++ +Y +NV +
Sbjct: 60 INVYYSVNVYYSINVYYSINVYYSVNVYYSVNVYYSV 96
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/35 (25%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +3
Query: 660 LFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
L+Y + V++++ +YY + ++++ +Y +NV I
Sbjct: 8 LYYFVNVYYSIDVYYSVNVYYSINVYYSVNVYYSI 42
Score = 28.3 bits (60), Expect = 8.1
Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +3
Query: 654 IFLFYQLQVFFNV-IYYKIQMFFTSALYRKINVIVXI 761
I ++Y + V++++ +YY + ++++ +Y INV +
Sbjct: 48 IDVYYSVTVYYSINVYYSVNVYYSINVYYSINVYYSV 84
>SB_49661| Best HMM Match : DNA_pol_B_exo (HMM E-Value=0)
Length = 852
Score = 30.7 bits (66), Expect = 1.5
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +2
Query: 176 GFPSDMWPSIQIPTIPPFDPKIPNFAF 256
G PSD WP P +PPF+P N F
Sbjct: 54 GRPSDKWPR---PALPPFEPASDNIQF 77
>SB_11888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 787
Score = 30.7 bits (66), Expect = 1.5
Identities = 21/52 (40%), Positives = 24/52 (46%)
Frame = +3
Query: 96 RSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTL 251
R F LCC PSRAL + R I RD Q Y +RH P+F L
Sbjct: 701 RPNYFGLCCQKGPSRALGMLSREI--RDDQVSASSSY---DYRHG-PRFGRL 746
>SB_32510| Best HMM Match : LRR_1 (HMM E-Value=0.0053)
Length = 377
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/66 (21%), Positives = 27/66 (40%)
Frame = +2
Query: 254 FSFPSPDNIKKTKPQPGQTYSGVYVSSNGGKGTMVANINGEVIEKKFGEDXXXXXXXXXX 433
F+ P DN++ ++P P Q S ++ GK + + I + + +
Sbjct: 296 FASPDTDNVRLSRPSPQQPSSASQAETSSGKEALESAIEDRSLRRSIVQYSTFDWSSVQL 355
Query: 434 IEDLKL 451
ED +L
Sbjct: 356 SEDKRL 361
>SB_53051| Best HMM Match : rve (HMM E-Value=1.3e-14)
Length = 1624
Score = 28.3 bits (60), Expect = 8.1
Identities = 21/54 (38%), Positives = 26/54 (48%)
Frame = +3
Query: 93 WRSRSFFLCCH*SPSRALALFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLL 254
WR R F C P GR + RD++A C P S R RH+ P+ TLL
Sbjct: 1182 WRKRHFVSCSSRWPR------GRA-SRRDARA-CAPTMPSARLRHTQPRKPTLL 1227
>SB_5079| Best HMM Match : fn3 (HMM E-Value=1.3e-35)
Length = 978
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 150 LFGRTITFRDSQAICGPLYRSQRFRHSIPKFRTLLF-RSPLLTTLRKLN 293
+FG T FR + GPL+RS + I KF + F R T+ K+N
Sbjct: 413 IFGLTTRFRVLLSTIGPLFRSCQNLPVISKFHCIRFTRDSRNVTVMKVN 461
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,998,048
Number of Sequences: 59808
Number of extensions: 500340
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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