Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F04
         (721 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    28   0.066
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.5  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       22   4.4  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   4.4  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   5.8  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   5.8  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   7.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   7.6  
AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.            21   7.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   7.6  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 28.3 bits (60), Expect = 0.066
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
 Frame = +3

Query: 246 GGSPGPLRKTHLTKVIDKLQTFRRTRSLNA-PSPIQQFGPCGRIMK-NSAMVMQIQ--DP 413
           GG+ G LR+        +L  F+RT +L A   P+Q F P        SAM+   Q  +P
Sbjct: 169 GGTTGKLRRRSTAASRSRLAAFKRTIALGAFYQPLQPFPPPYPFYPGTSAMLAAYQRYNP 228

Query: 414 ASQRLTWYKPPLTVLVIKKVHDAQILAPFVQL 509
             Q  +    P  ++  +  +  ++LAP  ++
Sbjct: 229 YLQAASMLPKPTPLVPQQGFNMERLLAPSTEV 260


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 628 KVIRRSFTDVKSPYS 584
           K  RRS+T  K PYS
Sbjct: 130 KTYRRSYTHAKPPYS 144


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -3

Query: 698 QGPVTPQAYDEV-DLI 654
           QGP+TP  YD + DL+
Sbjct: 186 QGPLTPILYDHIGDLV 201


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = -1

Query: 193 CSFILKIYPRI 161
           C+F++++YPR+
Sbjct: 170 CTFVVQVYPRL 180


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 612 PSPT*SPHTPQGVCHPKL---PPRRTPPCFCHERASVLAERRVPVS 484
           P P  SPH P    HP +    P++  P   H+  + L  +++P++
Sbjct: 232 PHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKPLN-LTIKKMPIA 276


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 612 PSPT*SPHTPQGVCHPKL---PPRRTPPCFCHERASVLAERRVPVS 484
           P P  SPH P    HP +    P++  P   H+  + L  +++P++
Sbjct: 124 PHPGLSPHPPHLSSHPAIVTPGPKQELPDLNHKPLN-LTIKKMPIA 168


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 126 TSHNLSQENSLDEIKKN 76
           T H+LSQ   + +I KN
Sbjct: 473 TEHSLSQSQHIQKIPKN 489


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 126 TSHNLSQENSLDEIKKN 76
           T H+LSQ   + +I KN
Sbjct: 298 TEHSLSQSQHIQKIPKN 314


>AF321227-6|AAK16426.1|  150|Tribolium castaneum Pb protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 385 PPWSCKSRIRRRRG*PGTSLPSPCWSSRKFTT 480
           PP      +    G PG ++P   W   K TT
Sbjct: 93  PPAGYPMDVPHGMGSPGVNVPEYPWMKEKKTT 124


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/32 (31%), Positives = 13/32 (40%)
 Frame = +1

Query: 385 PPWSCKSRIRRRRG*PGTSLPSPCWSSRKFTT 480
           PP      +    G PG ++P   W   K TT
Sbjct: 93  PPAGYPMDVPHGMGSPGVNVPEYPWMKEKKTT 124


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,794
Number of Sequences: 336
Number of extensions: 4498
Number of successful extensions: 21
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19155320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)