Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F04
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po...    53   5e-08
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||...    39   6e-04
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||...    34   0.023
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    29   0.67 
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    27   3.6  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    26   4.7  
SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|c...    26   4.7  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    26   6.2  
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...    26   6.2  
SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomy...    25   8.2  

>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 52.8 bits (121), Expect = 5e-08
 Identities = 34/100 (34%), Positives = 54/100 (54%)
 Frame = +3

Query: 420 QRLTWYKPPLTVLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDF 599
           ++L W KPP  +L++KK  D ++   F  LV  L        + +  ++ +T +A+   +
Sbjct: 55  KQLQWPKPPKNILILKKRMDERVDHCFETLVQHLQQ-----TYPDICIITETDVAKKFSY 109

Query: 600 TSVKERLMTFRASTDDLTDKIDFIICLGGDGTLLHAXSLF 719
            +    L T+     DL  K+D II +GGDGT+LHA SLF
Sbjct: 110 LN----LYTW-TEISDLEQKVDAIITVGGDGTILHAASLF 144


>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 393

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
 Frame = +3

Query: 426 LTWYKPPLT-VLVIKKVHDAQILAPFVQLVHWLVHDKSMVVFVEAAVLDDTLLAEYGDFT 602
           +T  KP +T +L++ K  D ++     + V+WL+   ++ VF++ ++ D   L E  +  
Sbjct: 70  VTPIKPNITSILLVSKPGDEEVEEKLKEFVYWLISLDNITVFIQKSMED---LFEKTEKI 126

Query: 603 SVKERLMTFRASTDDLTDKIDFIICLGGDGTLLHAXSLF 719
                L+  + S        D ++ LGGDGT+L+   LF
Sbjct: 127 QYWTTLLCTKHS-----QLFDLVLTLGGDGTVLYTSRLF 160


>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 380

 Score = 33.9 bits (74), Expect = 0.023
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 503 NEGCQYLGVVNFLDDQHGEGRLVPGQPLRRRILDLHDHGGIF 378
           N GC +  VV F++DQH        QP RR+I+D+  H  ++
Sbjct: 103 NSGC-WESVVEFIEDQHESYMRQDQQPDRRKIIDMRIHACLY 143


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 18/58 (31%), Positives = 24/58 (41%)
 Frame = +3

Query: 189 EQDLMVARALAAESRENSPGGSPGPLRKTHLTKVIDKLQTFRRTRSLNAPSPIQQFGP 362
           E D+    +  A  + NSP  S  P      T + + L T   TRS  + S IQ   P
Sbjct: 110 EADVKSLSSTPAAPQLNSPSHSYEPTTFPSTTSITENLPTIDPTRSTRSSSHIQSLSP 167


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 380 FHNPAAWSKLLYWGRRVQGSSSPKCLKLVYN 288
           F N  AWS++  W R    ++ PK L+   N
Sbjct: 254 FLNEGAWSEIKAWEREAGENTEPKLLRFEGN 284


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 150 IYCTPHLFTSHNLSQENSLDEIKKNYNNKSLC 55
           IYC   LF+ ++  + +S+DE+++   N   C
Sbjct: 11  IYCLIRLFSFNSRKRNSSIDELERGEINAFAC 42


>SPAC8C9.09c |mug129||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
 Frame = -3

Query: 707 SMQQGPVTPQAYDEVDLISEIVGASSESHQTFLHRRKVPILRKECVIQNCR--LDEHHHA 534
           S  Q PV   A  ++   SEI   SS S    L   K   L +E   ++C   +   +  
Sbjct: 199 SPNQQPVDSVANPQLRKASEITTISSRSDVDIL-LGKFKALIQESPDEHCNSWIQRIYIT 257

Query: 533 FVM--NEPVY*LNEGCQYLGVVNFLDDQHGEGRL 438
            V+  N  +Y LNE   +L  +  + +Q  EG+L
Sbjct: 258 CVLPRNHYIYLLNEQVDFLTSIEIMKNQVTEGKL 291


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 609 KERLMTFRASTDDLTDKIDFIICLGGDGTLLHA 707
           +ER    RA+ + ++  ID II  GGDG+L  A
Sbjct: 272 RERPGRLRAAKNLISAGIDSIIVCGGDGSLTGA 304


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
 Frame = -3

Query: 572 VIQNCRLDEHHHAFVMNEPVY*LNEGCQYLG--VVNFLDDQHGEGRLVPGQPLRRRIL-- 405
           +I++ R+   +H F  +EP   +    Q +    + F + + GE R++  +P    +L  
Sbjct: 88  IIEHARVQTQNHRFTYDEP-QGIESTTQSICDLALRFGEGEDGEERIM-SRPFGVALLIA 145

Query: 404 DLHDHG-GIFHNPAAWSKLLYWGRRVQGSSSPKCLKLVYNF 285
            + +HG  ++H+  + +   Y  + +   S P   +LV  F
Sbjct: 146 GIDEHGPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF 186


>SPBC25B2.06c |btb2||BTB/POZ domain protein Btb2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = -3

Query: 647 IVGASSESHQTFLHRRKVPILRKECVIQNCRLDEHHHAFVMNEPVY*LNEGCQYL 483
           I G +   H  FL R   P+L ++ +  N + D H+   V  E  Y   E C ++
Sbjct: 43  IKGETYHLHALFLGRS--PVLLQKLIENNPKGDVHYTIEVETEDPYVTKESCLFV 95


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,257,097
Number of Sequences: 5004
Number of extensions: 73129
Number of successful extensions: 209
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)