Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F04
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   2.9  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.9  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   8.9  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   8.9  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   8.9  

>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 127

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 64 ITVRNTCVLQNDLYDNAH 11
          +     C+L  DL+DN H
Sbjct: 39 LQANRACILIKDLFDNVH 56


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
          transcriptase protein.
          Length = 110

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 64 ITVRNTCVLQNDLYDNAH 11
          +     C+L  DL+DN H
Sbjct: 22 LQANRACILIKDLFDNVH 39


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 579 GVCHPKLPPRRTPPCFCHER 520
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 579 GVCHPKLPPRRTPPCFCHER 520
           G+   K P  R+PP F H R
Sbjct: 460 GIEEVKSPVLRSPPAFSHSR 479


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 379 FIILPHGPNCCIGD 338
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 379 FIILPHGPNCCIGD 338
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 379 FIILPHGPNCCIGD 338
           ++I+P  P+CC  D
Sbjct: 347 YVIVPFCPDCCPSD 360


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,208
Number of Sequences: 438
Number of extensions: 5601
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)