Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_F01
         (524 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   202   9e-53
U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    28   3.6  
Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  202 bits (494), Expect = 9e-53
 Identities = 95/142 (66%), Positives = 112/142 (78%), Gaps = 3/142 (2%)
 Frame = +3

Query: 36  MADQXEKAFQKQATVFLNRKGGM---KRKDMRHHKNVGLGFKTPREAIEGTYIDKKCPFT 206
           M++Q E+AF KQ TV LN K  +    +K  R+ + VGLGFK PR+A+EGTYIDKKCP+ 
Sbjct: 1   MSEQTERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWA 60

Query: 207 GNVSIRGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIG 386
           GNV IRG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  G
Sbjct: 61  GNVPIRGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPG 120

Query: 387 DIVTIGECRPLSKTVRFNVLKV 452
           D+VTIGECRPLSKTVRFNVLKV
Sbjct: 121 DLVTIGECRPLSKTVRFNVLKV 142


>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 446 QNIESNCFGQRSAFADRYNITNLHVPEARRQMHGH 342
           +++E  CF Q   F D +N+T L + +  R M+ H
Sbjct: 129 RSVELECFEQ---FVDLFNLTGLRILDVSRSMYKH 160


>Z69883-3|CAA93741.2|  450|Caenorhabditis elegans Hypothetical
           protein C27C12.4 protein.
          Length = 450

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 248 SEDEDAENYRDPPRLPSLPTQIQ*VRETAQEYVRAFVALL 367
           S++ED E+  DP  LP     +     +  E +R+ +ALL
Sbjct: 199 SQNEDIESSEDPLILPETENDVTLPASSVSEQLRSTIALL 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,639,534
Number of Sequences: 27780
Number of extensions: 233775
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)