Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E21
         (596 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    31   0.13 
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    27   2.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    27   2.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.8  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   6.3  
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy...    25   6.3  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   6.3  
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po...    25   8.4  
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch...    25   8.4  

>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 31.1 bits (67), Expect = 0.13
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 13/63 (20%)
 Frame = +3

Query: 306 DDYRNRPDYPESPLPISQPSTDKLIE-------------ILNEDPNVHYMDGICEDSSRT 446
           +D RN P+Y + P+ I+Q   DKLI+             I + DP V + D I +D+S +
Sbjct: 392 NDKRNLPEYNDVPVVINQDCYDKLIKDCIDERLAKHMAHIFSRDPLVIFSDSILQDNSVS 451

Query: 447 PYH 455
             H
Sbjct: 452 NAH 454


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -1

Query: 587 IFIILLKTF*KYISDVIISEGVDNEYSS---CAIV*VVILIASLYIAVIW 447
           +F I  K+F  ++S++I+S  +DNE+     C  V  VI +  + +   W
Sbjct: 191 VFDIFPKSFSSHLSNLIVSFPIDNEHERILFCGDVFPVITVDGVRLMDFW 240


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +3

Query: 312 YRNRPDYPESPLPISQPSTDKLIEILNEDPNVHYMDGICEDSSRTPYHSD 461
           YR + D       I++ +++ L++   E PNV     +C DS   P +SD
Sbjct: 482 YRRKADDETDGQYIAKLASEWLVQCRMEHPNVVKSYDLCIDSHIFPLYSD 531


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
 Frame = +3

Query: 282 PSRHKQTEDDYRNRPDYP-----ESPLPISQPSTDKLIEILNEDPN 404
           P+ ++ T D  RN    P     + P+ +++PS D    I+ E PN
Sbjct: 518 PAEYRDTPDTPRNIMPLPGLMSADQPIKVTEPSNDADKAIVAEGPN 563


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 336 ESPLPISQPSTDKLIEILNEDPNVHYMD 419
           + P P+SQPS  +L + L E    H  D
Sbjct: 5   DPPAPLSQPSASRLQKYLLESAEKHAYD 32


>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 314

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 369 LCSAVISAADSQGNPVCCGNRPRF--AYGAKATRKFPQSASSLSP 241
           +CS  I  ADSQ N +C     +F  A G    R +  + SS  P
Sbjct: 31  ICSRTIQHADSQVNRLCISPDKKFLAAAGNPHVRLYDINTSSQMP 75


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 255 KLTAGIFVLPSRHKQTEDDYRNRPDYPESPLPISQPSTDKLIEILNE 395
           KL   ++ L  R   +     N     E+P+ +SQP T  L+E+L +
Sbjct: 105 KLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTRILLEVLKQ 151


>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 373

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 381 EILNEDPNVHYMDGICE 431
           EI+ +DPN+  M  ICE
Sbjct: 120 EIMKKDPNMSLMQDICE 136


>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
           Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1108

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 234 LALERTDSSYAVCPILCIEGLLTSHVPL 151
           L + ++D   ++CP+LC    L  + PL
Sbjct: 717 LHVNKSDEIRSICPLLCERANLPKNTPL 744


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,407,234
Number of Sequences: 5004
Number of extensions: 50665
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)