Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E21
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1115 - 34225793-34225843,34225998-34226072,34226861-342268...    29   3.7  
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458...    29   3.7  
06_01_0603 - 4350124-4350590,4350995-4353608                           28   4.9  
12_02_1036 - 25587313-25587890,25589209-25589272,25589356-255894...    27   8.6  
02_05_0293 - 27585684-27586034,27586590-27586676                       27   8.6  

>02_05_1115 -
           34225793-34225843,34225998-34226072,34226861-34226898,
           34227017-34227113,34227843-34227967,34228071-34228140
          Length = 151

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 162 AKSEDLQYTISDIQ-HRNYLFSQEQETPVKEKKLTAGIFVLPSRHKQTEDDYRNRPDYPE 338
           A S   QY I ++Q H NYLFSQ++   + E+          ++   +ED++ + P++  
Sbjct: 4   ASSMLTQYDIEEVQEHCNYLFSQQEIVSLYERFCQLD---RSAKGFISEDEFLSIPEFSL 60

Query: 339 SPL 347
           +PL
Sbjct: 61  NPL 63


>01_03_0200 +
           13744735-13745037,13745071-13745610,13745704-13745862,
           13748992-13749123,13749282-13749472,13749541-13749792,
           13750248-13750323,13750411-13750602,13750688-13750689,
           13753230-13753287,13753736-13754941
          Length = 1036

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 282 PSRHKQTEDDYRNRPDYPESPLPISQPSTDKLIEILNEDPN 404
           P +HK  +D    + + PE P P   PST  + +   EDPN
Sbjct: 301 PPKHKPLKD----KAEEPEIPKPTEGPSTPVMPQNEQEDPN 337


>06_01_0603 - 4350124-4350590,4350995-4353608
          Length = 1026

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/59 (32%), Positives = 28/59 (47%)
 Frame = -3

Query: 360 AVISAADSQGNPVCCGNRPRFAYGAKATRKFPQSASSLSPEFLALERTDSSYAVCPILC 184
           A +SAA  +GNP  CG  P  A    AT +  +   ++ P  + +       AVC +LC
Sbjct: 573 ANLSAAAFRGNPGLCGYVPGIAACGAATARRTRHRRAVLPAVVGIVA-----AVCAMLC 626


>12_02_1036 -
           25587313-25587890,25589209-25589272,25589356-25589448,
           25589533-25589683,25590474-25590539,25590594-25590907
          Length = 421

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 285 SRHKQTEDDYRNRPDYPESPLPISQPST 368
           S   + +D Y NRP  P SP P+S+ S+
Sbjct: 255 SSDDEEDDYYMNRPLSPVSPSPVSRESS 282


>02_05_0293 - 27585684-27586034,27586590-27586676
          Length = 145

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 243 VKEKKLTAGIFVLPSRHKQTEDDYRNRPDYP 335
           V E+  TAGIF LP+   QT   ++  P+ P
Sbjct: 76  VTEQTTTAGIFRLPNPGTQTRRSHQPAPNLP 106


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,786,347
Number of Sequences: 37544
Number of extensions: 298565
Number of successful extensions: 750
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)