Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_E20
(715 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 60 3e-10
SPCC550.10 |meu8||betaine aldehyde dehydrogenase |Schizosaccharo... 53 4e-08
SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces pombe... 44 2e-05
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 44 2e-05
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 43 4e-05
SPAC139.05 |||succinate-semialdehyde dehydrogenase |Schizosaccha... 33 0.041
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha... 32 0.094
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo... 28 1.2
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.5
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 26 4.7
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 26 4.7
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 26 6.1
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 25 8.1
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 8.1
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 25 8.1
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 25 8.1
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 60.1 bits (139), Expect = 3e-10
Identities = 35/118 (29%), Positives = 57/118 (48%)
Frame = +2
Query: 200 RRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTLHYLDEWTKPE 379
RR LK L NQ+ E KD ++ ++A E+ + + TL ++ +P
Sbjct: 49 RRNFLKALKENIIRNQDKYAEIACKDTGKTLVDAAFGEILVTLEKINWTLANGEQSLRPT 108
Query: 380 HPPKGFVNILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELS 553
P + + +P GV+ + +WNYPL L P+ A+ AGN ++VK SEL+
Sbjct: 109 KRPNSLLTSYKGGYVKYEPLGVIAALVSWNYPLHNALGPIISALFAGNAIVVKGSELT 166
>SPCC550.10 |meu8||betaine aldehyde dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 500
Score = 53.2 bits (122), Expect = 4e-08
Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Frame = +2
Query: 434 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSV-ACSNFVVENLPKYLDNDA 610
P GV+ VI WN+PL++ L + AIA+GN V++KPSEL+ +C F + L +
Sbjct: 162 PRGVIGVITPWNFPLKMALWKLVPAIASGNCVVLKPSELAPWSCLEFALICKEAGLPDGV 221
Query: 611 FIVFEGGPQETTELLK--QRFDYIFYTGGTNVG 703
V G +E+ L + Y+ +TG G
Sbjct: 222 LNVIIGSGKESGAALSCHPKIAYLAFTGSLATG 254
>SPAC922.07c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 496
Score = 44.0 bits (99), Expect = 2e-05
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 6/99 (6%)
Frame = +2
Query: 434 PYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE---LSVACSNFVVE--NLPKYL 598
P GV I WNYPL + +A A+AAGN +I+K +E LS+ +VE PK +
Sbjct: 154 PIGVCGQIVPWNYPLNMAGWKIAPALAAGNCIIIKSAETTPLSLLYFATLVEEAGFPKGV 213
Query: 599 DNDAFIVFEGGPQETTELLKQ-RFDYIFYTGGTNVGXIV 712
N I+ G + + K D I +TG T VG IV
Sbjct: 214 VN---IISGLGTVAGSYMAKHPGIDKIAFTGSTKVGVIV 249
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 44.0 bits (99), Expect = 2e-05
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Frame = +2
Query: 428 NDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSELSVACSNFVVENLPKY-LDN 604
++P GV I WN+P + +A A+A GNT+I+K +EL+ + + + +P+
Sbjct: 158 HEPIGVCGQIIPWNFPFLMCAWKIAPAVACGNTIILKTAELTPLSALCLTKFVPECGFPP 217
Query: 605 DAFIVFEGGPQETTELLKQRFDY--IFYTGGTNVGXIV 712
V G + + D + +TG T VG +V
Sbjct: 218 GVINVLSGDGRRCGNAISSHMDIDKVAFTGSTGVGRMV 255
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 43.2 bits (97), Expect = 4e-05
Identities = 32/111 (28%), Positives = 56/111 (50%), Gaps = 7/111 (6%)
Frame = +2
Query: 401 NILDEVVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPSE----LSVACSN 568
N + ++ P GVV +I WN+P ++ + A+AAG TV+++P+ ++A +
Sbjct: 148 NPQNRIITIKQPVGVVGIITPWNFPAAMITRKVGAALAAGCTVVIRPAAETPFTALALAK 207
Query: 569 FVVE-NLPKYLDN--DAFIVFEGGPQETTELLKQRFDYIFYTGGTNVGXIV 712
+P + N A E G + TT L ++ + +TG TNVG I+
Sbjct: 208 LAERAGVPAGVLNMVTANSPSEHGIELTTNPLIRK---VSFTGSTNVGKIL 255
>SPAC139.05 |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 493
Score = 33.1 bits (72), Expect = 0.041
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Frame = +2
Query: 416 VVIYNDPYGVVLVIGAWNYPLQLLLLPMAGAIAAGNTVIVKPS-ELSVACSNFV-VENLP 589
++ P GV +I WN+P ++ A+AAG T I P+ C V +
Sbjct: 148 LISIKQPVGVSALITPWNFPAAMIARKGGAALAAGCTAIFLPAFRTPYVCLGLVRLAQEA 207
Query: 590 KYLDNDAFIVFEG-----GPQETTELLKQRFDYIFYTGGTNVGXIV 712
+ D ++ G + TT + ++ + +TG TNVG I+
Sbjct: 208 GFPDGVLNVITSSDASAHGKELTTNPIVRK---VSFTGSTNVGKIL 250
>SPBC29A3.05 |||chromatin remodeling complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 31.9 bits (69), Expect = 0.094
Identities = 25/98 (25%), Positives = 48/98 (48%), Gaps = 10/98 (10%)
Frame = +2
Query: 143 AVQKARDTFNRGTTRPIEWRRQQLKNLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDY 322
AVQK + R P+ RQ +NL + ++N + + + KDL + ++ + + V
Sbjct: 9 AVQKRKKQKQRSVVDPVTRERQLKRNLADLEKDNFSDIRFEIPKDLLQRRV--LPISVRR 66
Query: 323 LINDLRNTLHYLDEW---------TKPEH-PPKGFVNI 406
+++ + ++YLDE KP + PP+ F N+
Sbjct: 67 ILSSRKTFVNYLDETPNSRYNTCVAKPSYKPPRKFCNV 104
>SPBC215.01 ||SPBC3B9.20|GTPase activating
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 218 NLLRMYEENQNVMVEALHKDLRRSKMEAILLEVDYLINDLRNTL 349
+LL++Y + +E + KDL RS E + + IN LRN L
Sbjct: 249 HLLKVYSGQTSFSLEEIEKDLGRSLPEYPAYQNEEGINALRNVL 292
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 110 TSKQKTMSAAEAVQKARDTFNRGTTRPIEWRRQQLKNL 223
TSK T SAA+ K + + T++PI +++ L
Sbjct: 202 TSKPATTSAAQPSSKVEENMAKATSQPITTAEKEIPEL 239
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 26.2 bits (55), Expect = 4.7
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -1
Query: 541 GFHDNRVPGSDGSGHRQKQQLQGIVPGAYYEDHA 440
GFH RVP SD +G +Q+QQ + V A+ + A
Sbjct: 564 GFHVVRVP-SDAAGFQQRQQQEEGVLEAHTNESA 596
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 4.7
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 486 SSCKG*FQAPITRTTPYGSLYITTSSRMFTK 394
S K F+ I +TTPYGS T S ++ TK
Sbjct: 220 SKLKNNFRGIIYKTTPYGSCNDTESLQVDTK 250
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 96 TGILQHPNKRRCQLLRPSKKLETLSIAAQPGR*NGAVSSSRI 221
+G+LQ +KR P K ++ S QP R +GA S++ +
Sbjct: 138 SGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASL 179
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +2
Query: 212 LKNLLRMYEENQNVMVEALHKDLRRSK-MEAILLEVDYLIND 334
LKNLL + +++ EAL+K L +K + +L E + LIN+
Sbjct: 255 LKNLLEVKDKDVEGRNEALNKILHPAKNLVELLTEKENLINE 296
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.4 bits (53), Expect = 8.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 676 DVVKPLFEQLSGLLRTSFEYDESIIIQILW*IFDNKVRAGD 554
D+ +F+ ++ L TSF + +II I+W I RA D
Sbjct: 145 DIGGRIFDLITRLAGTSFTFILMLIILIVWAIVGGIYRAPD 185
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 25.4 bits (53), Expect = 8.1
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 318 STSSRMASILLRLRSLCRASTMTFWFSSY-ILNR 220
STSS M + L SL + +FW SSY + NR
Sbjct: 762 STSSMMKTWLCAKFSLKETNKTSFWHSSYNLFNR 795
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -1
Query: 544 AGFHDNRVPGSDGSGHRQKQQLQGIVPG 461
+G H V G G+ H + +L G PG
Sbjct: 323 SGTHGTHVAGIIGANHPETPELNGAAPG 350
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,970,584
Number of Sequences: 5004
Number of extensions: 63987
Number of successful extensions: 179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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