Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_E19
(664 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone] iron-su... 287 1e-76
UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 240 2e-62
UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1; ... 215 6e-55
UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacteri... 209 4e-53
UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4 su... 200 2e-50
UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 186 3e-46
UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit ... 169 5e-41
UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 163 3e-39
UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2... 160 2e-38
UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2; A... 157 2e-37
UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19; F... 157 3e-37
UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp... 157 3e-37
UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4; B... 153 5e-36
UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter xy... 151 1e-35
UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone oxido... 150 3e-35
UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4; ... 150 3e-35
UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1; O... 149 8e-35
UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellul... 149 8e-35
UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit; n... 147 2e-34
UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6; Ther... 147 2e-34
UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D; ... 147 2e-34
UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aqui... 146 4e-34
UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa s... 146 4e-34
UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5; Actinomycetale... 145 7e-34
UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2; Anaeromyxobact... 144 1e-33
UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi (c... 142 5e-33
UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4; Cystobacterine... 141 1e-32
UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase... 138 1e-31
UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 138 1e-31
UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1; Sy... 137 3e-31
UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 136 3e-31
UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1; Bd... 136 6e-31
UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,... 134 1e-30
UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D; ... 132 5e-30
UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8; Bac... 131 1e-29
UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D... 130 2e-29
UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 125 1e-27
UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4; Deltaproteobac... 124 2e-27
UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d; ... 124 3e-27
UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;... 122 8e-27
UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8; B... 119 5e-26
UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n... 117 3e-25
UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;... 104 2e-21
UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase, ... 103 4e-21
UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: Nu... 102 7e-21
UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;... 102 9e-21
UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2; Sulf... 101 1e-20
UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit, put... 99 1e-19
UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit... 95 2e-18
UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 94 2e-18
UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum pe... 94 2e-18
UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep: ... 90 4e-17
UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 88 2e-16
UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1; uncult... 87 3e-16
UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular organ... 87 5e-16
UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD su... 86 6e-16
UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n... 85 2e-15
UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;... 84 3e-15
UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa s... 84 3e-15
UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 83 6e-15
UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precurs... 80 5e-14
UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n... 78 2e-13
UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9; Eu... 76 7e-13
UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;... 75 2e-12
UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2; Methanomicrobi... 75 2e-12
UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1; Propi... 74 3e-12
UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 74 3e-12
UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 74 4e-12
UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein... 72 1e-11
UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 71 2e-11
UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate h... 71 2e-11
UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19; Bacter... 71 3e-11
UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative... 70 6e-11
UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precurs... 69 1e-10
UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 68 2e-10
UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;... 66 7e-10
UniRef50_Q1PZL4 Cluster: Similar to membrane-bound [NiFe]-hydrog... 66 9e-10
UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=... 65 1e-09
UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa... 63 5e-09
UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3; Methanomicrobi... 63 7e-09
UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1; Rh... 62 9e-09
UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1; G... 62 9e-09
UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH dehyd... 61 2e-08
UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10... 59 1e-07
UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2; D... 59 1e-07
UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6; Me... 58 2e-07
UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 56 8e-07
UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4; Methano... 56 8e-07
UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium ce... 56 1e-06
UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus... 54 4e-06
UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11; Alphaproteobacte... 53 7e-06
UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n... 52 1e-05
UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4; Methanom... 51 3e-05
UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 50 7e-05
UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4; Leptosp... 49 9e-05
UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei ... 48 2e-04
UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 45 0.001
UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3... 45 0.002
UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate hydrog... 44 0.002
UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1; ... 43 0.006
UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=... 41 0.023
UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit, ... 41 0.031
UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;... 41 0.031
UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain 49... 40 0.040
UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus... 38 0.16
UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=... 38 0.16
UniRef50_Q6APF2 Cluster: Related to hydrogenase, component E-for... 38 0.22
UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE; ... 38 0.22
UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5; Bacteri... 38 0.28
UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain 4... 36 0.66
UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large sub... 36 0.66
UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large sub... 35 1.5
UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-lik... 34 2.7
UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1; T... 34 2.7
UniRef50_UPI0000E1F6B3 Cluster: PREDICTED: hypothetical protein,... 33 4.6
UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2; ... 33 4.6
UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4; Pyrobac... 33 4.6
UniRef50_Q4JSE9 Cluster: Putative membrane protein precursor; n=... 33 8.1
UniRef50_Q3WCX1 Cluster: Cell divisionFtsK/SpoIIIE protein; n=1;... 33 8.1
UniRef50_Q2UB00 Cluster: Polyketide synthase modules and related... 33 8.1
>UniRef50_O75306 Cluster: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor; n=305;
cellular organisms|Rep: NADH dehydrogenase [ubiquinone]
iron-sulfur protein 2, mitochondrial precursor - Homo
sapiens (Human)
Length = 463
Score = 287 bits (705), Expect = 1e-76
Identities = 133/179 (74%), Positives = 147/179 (82%)
Frame = +3
Query: 126 RWFPDPAFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVL 305
+W PD + +QF G VMYP + T KP P+N + P + V+N+ LNFGPQHPAAHGVL
Sbjct: 36 QWQPDVEWAQQFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVL 95
Query: 306 RLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAV 485
RLV+EL GE VR DPHIGLLHRGTEKLIEYKTY QALPYFDRLDYVSMMCNEQ YSLAV
Sbjct: 96 RLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAV 155
Query: 486 EKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
EKLLNI P RA++IR LF EITRLLNHIMAV THALD+GA+TPFFWLFEEREKM EFY
Sbjct: 156 EKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFY 214
>UniRef50_P93306 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=37; cellular organisms|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Arabidopsis thaliana
(Mouse-ear cress)
Length = 394
Score = 240 bits (588), Expect = 2e-62
Identities = 107/141 (75%), Positives = 124/141 (87%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
+++++N LNFGPQHPAAHGVLRLVLE++GE V A+PHIGLLHRGTEKLIEYKTY QAL
Sbjct: 5 KRQIKNFTLNFGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQAL 64
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 599
PYFDR DYVSMM E YSLAVEKLLN +VPLRA+YIR LF EITR+LNH++A+ THA+D
Sbjct: 65 PYFDRSDYVSMMAQEHAYSLAVEKLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMD 124
Query: 600 VGALTPFFWLFEEREKMMEFY 662
VGALTPF W FEEREK++EFY
Sbjct: 125 VGALTPFLWAFEEREKLLEFY 145
>UniRef50_Q4P4N9 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 498
Score = 215 bits (526), Expect = 6e-55
Identities = 107/167 (64%), Positives = 123/167 (73%), Gaps = 26/167 (15%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAAD----------------------- 350
++ +R+ +NFGPQHPAAHGVLRL+LEL+GE + D
Sbjct: 83 DRSLRHFTVNFGPQHPAAHGVLRLILELNGEEILRTDLAICKANIADSIQSCLFWPSGVC 142
Query: 351 ---PHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRA 521
PH+GLLHRGTEKLIEYKTYTQALPYFDRLDYVSMM NE CYS AVEKLLNI+VP RA
Sbjct: 143 ILQPHVGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMTNELCYSRAVEKLLNIEVPERA 202
Query: 522 KYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
K+IRT+F EITR+LNH MAV +H +DVG LTPF W FEEREK+MEFY
Sbjct: 203 KWIRTMFGEITRILNHCMAVLSHVMDVGGLTPFLWAFEEREKLMEFY 249
>UniRef50_A7DLV5 Cluster: NADH dehydrogenase; n=1; Methylobacterium
extorquens PA1|Rep: NADH dehydrogenase -
Methylobacterium extorquens PA1
Length = 447
Score = 209 bits (511), Expect = 4e-53
Identities = 98/141 (69%), Positives = 112/141 (79%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
E +RN +NFGPQHPAAHGVLRLVLELDGE V DPHIGLLHRGTEKLIE+KTY QA
Sbjct: 24 EHNIRNFSINFGPQHPAAHGVLRLVLELDGEVVERVDPHIGLLHRGTEKLIEHKTYLQAT 83
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 599
PYFDRLDYV+ M E + LA+E+L I+VP RA+ IRTLF EI RLL+H++ V T A+D
Sbjct: 84 PYFDRLDYVAPMNQEHAFCLAIERLAGIEVPRRAQLIRTLFCEIGRLLSHLLNVTTQAMD 143
Query: 600 VGALTPFFWLFEEREKMMEFY 662
VGALTP W FEEREK+M FY
Sbjct: 144 VGALTPPLWGFEEREKLMIFY 164
>UniRef50_Q9PGJ2 Cluster: NADH-ubiquinone oxidoreductase, NQO4
subunit; n=105; Proteobacteria|Rep: NADH-ubiquinone
oxidoreductase, NQO4 subunit - Xylella fastidiosa
Length = 435
Score = 200 bits (488), Expect = 2e-50
Identities = 92/156 (58%), Positives = 116/156 (74%), Gaps = 2/156 (1%)
Frame = +3
Query: 201 LKPVPYNSIIKPAEKK--VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHR 374
++ P S E K +RN +NFGPQHPAAHGVLRL+LE+DGETV ADPHIGLLHR
Sbjct: 4 IRQAPATSASNATESKQEIRNYTMNFGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHR 63
Query: 375 GTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEIT 554
GTEKL E K + Q++ Y DRLDYVSMMCNE Y A+E L+ I P RA+YIRT+F EIT
Sbjct: 64 GTEKLAESKPFNQSIGYMDRLDYVSMMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEIT 123
Query: 555 RLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
R+LNH+M +G++ALD+GA+ + F ERE++M+ Y
Sbjct: 124 RILNHLMWLGSNALDLGAMAVMLYAFREREELMDVY 159
>UniRef50_P15689 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=9; Intramacronucleata|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Paramecium tetraurelia
Length = 400
Score = 186 bits (454), Expect = 3e-46
Identities = 83/139 (59%), Positives = 108/139 (77%), Gaps = 1/139 (0%)
Frame = +3
Query: 249 VRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF 428
++ + +NFGPQHPAAHGVLRL+L+L+GE V D HIGLLHRG+EKL+E K Y Q++PYF
Sbjct: 1 MKAICVNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYF 60
Query: 429 DRLDYVSMMCNEQCYSLAVEKLLN-IDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
DRLDYVSMM E Y LA+E LLN + +RT+F E+TR+LNH++A+ HALD+G
Sbjct: 61 DRLDYVSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIG 120
Query: 606 ALTPFFWLFEEREKMMEFY 662
+++ FW FEEREK+MEFY
Sbjct: 121 SMSSIFWAFEEREKIMEFY 139
>UniRef50_A3ERJ4 Cluster: NADH ubiquinone oxidoreductase subunit 7;
n=2; Leptospirillum|Rep: NADH ubiquinone oxidoreductase
subunit 7 - Leptospirillum sp. Group II UBA
Length = 423
Score = 169 bits (411), Expect = 5e-41
Identities = 71/134 (52%), Positives = 102/134 (76%)
Frame = +3
Query: 261 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 440
+LN GPQHP+ HGVLR++LELDGE ++ + P +G LHRGTEK+ EY+TY Q +P DRLD
Sbjct: 41 LLNMGPQHPSTHGVLRVLLELDGERIKRSVPDLGYLHRGTEKIAEYRTYNQIIPLTDRLD 100
Query: 441 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 620
YVS M N + VEKLL + VP RA+++RT+ AE+ R++NH+ +GT ALD+GA++ F
Sbjct: 101 YVSAMANNYAFVRTVEKLLQLKVPDRAEFVRTIVAEVQRIVNHLFWLGTQALDIGAMSVF 160
Query: 621 FWLFEEREKMMEFY 662
F+ F ERE++++ +
Sbjct: 161 FYTFREREELLDIF 174
>UniRef50_Q5DUX5 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit; n=3; Nyctotherus ovalis|Rep: NADH-ubiquinone
oxidoreductase 49 kDa subunit - Nyctotherus ovalis
Length = 412
Score = 163 bits (396), Expect = 3e-39
Identities = 71/140 (50%), Positives = 101/140 (72%), Gaps = 1/140 (0%)
Frame = +3
Query: 246 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 425
+ R +ILNFGPQHPA+HGVLRLV+ + GE V DPHIG LHRGTE+L+E +Y A +
Sbjct: 23 RFRILILNFGPQHPASHGVLRLVIVIIGEVVTKLDPHIGFLHRGTERLVEEHSYMNAAVF 82
Query: 426 FDRLDYVSMMCNEQCYSLAVEK-LLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 602
DRLDY +++ Y LAVE+ L + +R + +RT+F E++R+LNH++++ THALD+
Sbjct: 83 MDRLDYTTVLTQTHAYCLAVEQALAKSRLCIRTQLLRTIFDELSRILNHLLSIATHALDI 142
Query: 603 GALTPFFWLFEEREKMMEFY 662
G + FW FE+RE++ME Y
Sbjct: 143 GTMAMLFWAFEDRERIMELY 162
>UniRef50_P56908 Cluster: NADH-quinone oxidoreductase subunit D 2;
n=4; Bacteria|Rep: NADH-quinone oxidoreductase subunit D
2 - Rhizobium meliloti (Sinorhizobium meliloti)
Length = 404
Score = 160 bits (389), Expect = 2e-38
Identities = 72/135 (53%), Positives = 94/135 (69%)
Frame = +3
Query: 252 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 431
+ ++LN GPQHP+ HGVLRLVL+LDGE V DPHIG LHRGTEKL E TYTQ P D
Sbjct: 18 KEVLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTD 77
Query: 432 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
RLDY+ N ++LAVEKLL I+ P+RA+YIR + AE+ R+ H++ G +D+GA+
Sbjct: 78 RLDYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAM 137
Query: 612 TPFFWLFEEREKMME 656
T + ERE +M+
Sbjct: 138 TALLYAMREREMIMD 152
>UniRef50_Q1IS59 Cluster: NADH dehydrogenase I, D subunit; n=2;
Acidobacteria|Rep: NADH dehydrogenase I, D subunit -
Acidobacteria bacterium (strain Ellin345)
Length = 381
Score = 157 bits (381), Expect = 2e-37
Identities = 67/135 (49%), Positives = 99/135 (73%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
++LN GPQHP+ HGVLR++L+LDGE V + IG LHRG EK+ E +TY Q PY DR+
Sbjct: 23 LVLNMGPQHPSTHGVLRVILKLDGERVLGTECVIGYLHRGVEKIAENRTYVQFNPYVDRM 82
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
DYV+ + N Y AVEKL+++ P RA+++R + E+ RL +H++ +GTHALD+GALTP
Sbjct: 83 DYVAAVSNGLGYCEAVEKLIDVQAPPRAQFLRVILTELNRLASHMVWLGTHALDIGALTP 142
Query: 618 FFWLFEEREKMMEFY 662
F+ F +RE++++ +
Sbjct: 143 LFYTFRDREEVLKIF 157
>UniRef50_Q67KN9 Cluster: NADH dehydrogenase I subunit D; n=19;
Firmicutes|Rep: NADH dehydrogenase I subunit D -
Symbiobacterium thermophilum
Length = 384
Score = 157 bits (380), Expect = 3e-37
Identities = 70/142 (49%), Positives = 101/142 (71%), Gaps = 2/142 (1%)
Frame = +3
Query: 243 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 422
++ + +++N GPQHP+ HGVLRL+++LDGE V +P IG LHR EKL E KTY Q +P
Sbjct: 4 ERTQELLVNMGPQHPSTHGVLRLMIKLDGEQVTWCEPDIGYLHRCFEKLAEQKTYPQVIP 63
Query: 423 YFDRLDYVSMMCNEQCYSLAVEKLLN--IDVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 596
+ DR DY++ M NE CY AVEKL I VP RA+YIR + AE+ R+ +H++A+G+ A+
Sbjct: 64 FTDRTDYLAAMLNELCYVEAVEKLFGDAIQVPERAQYIRVMLAELQRITSHLLALGSMAM 123
Query: 597 DVGALTPFFWLFEEREKMMEFY 662
D+GA TPF + + +REK+ +
Sbjct: 124 DLGATTPFLYCWRDREKLYSLF 145
>UniRef50_A6FCN3 Cluster: NuoD2 NADH I CHAIN D; n=1; Moritella sp.
PE36|Rep: NuoD2 NADH I CHAIN D - Moritella sp. PE36
Length = 405
Score = 157 bits (380), Expect = 3e-37
Identities = 71/135 (52%), Positives = 94/135 (69%)
Frame = +3
Query: 252 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 431
R +++N GPQHP+ HGVLRL+L++DGE V+ +PHIGLLHRGTEKL E TYTQ P D
Sbjct: 18 REVLMNLGPQHPSTHGVLRLLLQMDGEIVKRIEPHIGLLHRGTEKLCESFTYTQIFPLTD 77
Query: 432 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
RLDY+ N Y+LAVE LL I P RA+YIR L AE++R+ H++ G +DVGA+
Sbjct: 78 RLDYLCQPSNNLGYALAVEALLGIKAPERAQYIRVLMAELSRISGHLLITGALPMDVGAI 137
Query: 612 TPFFWLFEEREKMME 656
T + +RE +M+
Sbjct: 138 TTLLYTMRDREMIMD 152
>UniRef50_Q2S5J0 Cluster: NADH dehydrogenase I, D subunit; n=4;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Salinibacter ruber (strain DSM 13855)
Length = 451
Score = 153 bits (370), Expect = 5e-36
Identities = 71/148 (47%), Positives = 101/148 (68%)
Frame = +3
Query: 207 PVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEK 386
P S + P E + MILN GPQHPA HGVLR V+++DGET+ + IG LHRG EK
Sbjct: 53 PATQRSEVDPLENE---MILNIGPQHPATHGVLRCVVKMDGETIEKSVLDIGYLHRGIEK 109
Query: 387 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 566
L E+KTY + +PY DR+DY+S N + LAVEKL +I+VP RA++IR + +E+ R+ +
Sbjct: 110 LAEHKTYQEFMPYTDRMDYLSPYSNNVAWCLAVEKLADIEVPERAQWIRMIMSELARISS 169
Query: 567 HIMAVGTHALDVGALTPFFWLFEEREKM 650
H + +G +D GA++ F W F+ERE++
Sbjct: 170 HCLWLGVGMMDAGAVSGFVWTFQEREEI 197
>UniRef50_Q1AVI6 Cluster: NADH dehydrogenase; n=1; Rubrobacter
xylanophilus DSM 9941|Rep: NADH dehydrogenase -
Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129)
Length = 358
Score = 151 bits (366), Expect = 1e-35
Identities = 67/133 (50%), Positives = 92/133 (69%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
+N GPQHPA HG+LRL+LELDGET+ DP +G LHR EK+ E +TY +P DRLDY
Sbjct: 1 MNMGPQHPAMHGLLRLILELDGETIVRCDPVMGYLHRCQEKIAENRTYPAVIPLTDRLDY 60
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ M NE Y LAVE LL +++P RA+YIR L E+ R+ +H+ ++G L++GA TP
Sbjct: 61 FANMHNEHGYCLAVEDLLGVEIPPRAEYIRVLMCELMRIASHLPSIGFLLLELGAFTPIL 120
Query: 624 WLFEEREKMMEFY 662
+ F ERE++ F+
Sbjct: 121 YAFRERERIQNFF 133
>UniRef50_Q3ZXR8 Cluster: Proton-translocating NADH-quinone
oxidoreductase, D subunit; n=7; Bacteria|Rep:
Proton-translocating NADH-quinone oxidoreductase, D
subunit - Dehalococcoides sp. (strain CBDB1)
Length = 367
Score = 150 bits (364), Expect = 3e-35
Identities = 70/140 (50%), Positives = 92/140 (65%), Gaps = 1/140 (0%)
Frame = +3
Query: 246 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 425
K N ILN GPQHP+ HGV RL + LDGE + +P G LHRG EKL E +TY Q +P+
Sbjct: 4 KTENFILNIGPQHPSTHGVFRLRIVLDGEVITDLEPVFGYLHRGIEKLAEGRTYLQDIPF 63
Query: 426 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
DRLDY+ M N Y +AVEKL I VP RA+YIR + E+ R+ +H+ +G D+G
Sbjct: 64 TDRLDYLGSMTNNHAYVMAVEKLAGITVPERAEYIRVILDELQRIASHLAGLGFFLNDLG 123
Query: 606 AL-TPFFWLFEEREKMMEFY 662
AL TP ++F EREK++E +
Sbjct: 124 ALQTPLLYMFREREKIVELF 143
>UniRef50_Q56220 Cluster: NADH-quinone oxidoreductase subunit 4;
n=10; Bacteria|Rep: NADH-quinone oxidoreductase subunit
4 - Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 409
Score = 150 bits (364), Expect = 3e-35
Identities = 72/155 (46%), Positives = 104/155 (67%), Gaps = 1/155 (0%)
Frame = +3
Query: 201 LKPVPYNSIIKPA-EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRG 377
L+ +P ++ + A E + M LN GPQHP+ HGVLRL++ L GE V PHIG LH G
Sbjct: 6 LEEIPLDAPPEEAKELRTEVMTLNVGPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTG 65
Query: 378 TEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITR 557
EK +E++TY Q + Y R+DY+ ++ Y+LAVEKLL VP RA+ IR + E++R
Sbjct: 66 FEKTMEHRTYLQNITYTPRMDYLHSFAHDLAYALAVEKLLGAVVPPRAETIRVILNELSR 125
Query: 558 LLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
L +H++ +GT LD+GALTPFF+ F ERE +++ +
Sbjct: 126 LASHLVFLGTGLLDLGALTPFFYAFRERETILDLF 160
>UniRef50_A7CUG2 Cluster: NADH dehydrogenase I, D subunit; n=1;
Opitutaceae bacterium TAV2|Rep: NADH dehydrogenase I, D
subunit - Opitutaceae bacterium TAV2
Length = 419
Score = 149 bits (360), Expect = 8e-35
Identities = 68/163 (41%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Frame = +3
Query: 177 YPDESTKSLKPVPYNSIIKP-AEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 353
+PD + ++ + + + A M ++ GP HP+ HGVLRL LELDGE V DP
Sbjct: 7 FPDAAARTTAHAAGDPLFQTIAASDDEKMSISMGPSHPSTHGVLRLQLELDGEIVTKCDP 66
Query: 354 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 533
IG LHRG EK+ E TY Q +PY DRLDY++ + N Y++AVE+L ++VP R + IR
Sbjct: 67 VIGYLHRGDEKIAENMTYNQFVPYTDRLDYLAPLANNVAYAIAVERLAGLEVPARCQAIR 126
Query: 534 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
+ AE+ R+ +H++ G+ A+D G+ T F + F EREK+ + +
Sbjct: 127 VIVAELARISSHLLGFGSFAMDTGSWTAFMYQFNEREKLYKLF 169
>UniRef50_A3ZL03 Cluster: NADH dehydrogenase; n=1; Blastopirellula
marina DSM 3645|Rep: NADH dehydrogenase -
Blastopirellula marina DSM 3645
Length = 418
Score = 149 bits (360), Expect = 8e-35
Identities = 66/152 (43%), Positives = 106/152 (69%)
Frame = +3
Query: 201 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 380
++ P + I++ + + M++N GPQHP+ HGVLRLVL DGE V A PHIG LHR
Sbjct: 18 MEMAPTSGIVE-IDVRTDEMLVNMGPQHPSTHGVLRLVLRTDGEVVSEATPHIGYLHRCA 76
Query: 381 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 560
EK+ E T Q +PY DR+DY++ M ++LAVEKL++ D+P +A+++R + AE+ R+
Sbjct: 77 EKIGENLTPRQWIPYTDRMDYLAGMNMNLGWALAVEKLIDYDLPEKARHLRVIIAELNRI 136
Query: 561 LNHIMAVGTHALDVGALTPFFWLFEEREKMME 656
+H++ +GT+ LD+G+ +PF + F ERE++++
Sbjct: 137 ASHLVGMGTYGLDLGSFSPFLYAFRERERILD 168
>UniRef50_Q8KEC0 Cluster: NADH dehydrogenase I, 49 kDa subunit;
n=12; Bacteroidetes/Chlorobi group|Rep: NADH
dehydrogenase I, 49 kDa subunit - Chlorobium tepidum
Length = 368
Score = 147 bits (357), Expect = 2e-34
Identities = 65/132 (49%), Positives = 94/132 (71%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
M+L+ GPQHP+ HGVLRL DGE V A+P++G LHR EK E Y +PY DR+
Sbjct: 1 MVLSMGPQHPSTHGVLRLECITDGEVVVEAEPYLGYLHRCFEKHCEKIDYPAIVPYTDRM 60
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
DY++ M NE Y + VEKLL+I++P R ++IR + AE+ R+ +H++A+GT+A+D+GA TP
Sbjct: 61 DYLAGMNNELAYCITVEKLLDIEIPRRVEFIRVIVAELNRIASHLVAIGTYAIDLGAFTP 120
Query: 618 FFWLFEEREKMM 653
F + F +RE +M
Sbjct: 121 FLFCFRDREHIM 132
>UniRef50_Q979M3 Cluster: NADH dehydrogenase I chain D; n=6;
Thermoplasmatales|Rep: NADH dehydrogenase I chain D -
Thermoplasma volcanium
Length = 369
Score = 147 bits (357), Expect = 2e-34
Identities = 66/133 (49%), Positives = 95/133 (71%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
+NFGPQHP+ HGVLRL ++LDGE V+ +P IG LHR EK+ E + Y + YFDR+DY
Sbjct: 9 VNFGPQHPSMHGVLRLKVKLDGEIVKDVEPIIGYLHRNAEKICELQFYCDNMIYFDRMDY 68
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
V+ M E Y A EKLL+++ P RAK+IR + E+ R+ +H++ +G LD+G LTPFF
Sbjct: 69 VAAMNMEIGYLEAAEKLLDVEPPGRAKWIRVMMGELNRIASHLVWLGAFGLDLGMLTPFF 128
Query: 624 WLFEEREKMMEFY 662
+ F+EREK+++ +
Sbjct: 129 YCFKEREKILKIF 141
>UniRef50_Q9PM99 Cluster: NADH-quinone oxidoreductase subunit D;
n=24; Epsilonproteobacteria|Rep: NADH-quinone
oxidoreductase subunit D - Campylobacter jejuni
Length = 408
Score = 147 bits (356), Expect = 2e-34
Identities = 69/152 (45%), Positives = 98/152 (64%)
Frame = +3
Query: 201 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 380
LKP N + + K MI+N GPQHP+AHG LRL+LELDGE V A P IG +HRG
Sbjct: 7 LKPYYENIAFEQEDSK---MIINLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGM 63
Query: 381 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 560
EK+ E Y + +P DR+DY++ N Y AVEKL +++P RA IR + E+ R+
Sbjct: 64 EKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRI 123
Query: 561 LNHIMAVGTHALDVGALTPFFWLFEEREKMME 656
+H++ + THALD+GA++ F + F ERE +++
Sbjct: 124 TSHLLWLATHALDIGAMSVFLYCFREREYVLD 155
>UniRef50_O66826 Cluster: NADH dehydrogenase I chain D; n=4; Aquifex
aeolicus|Rep: NADH dehydrogenase I chain D - Aquifex
aeolicus
Length = 593
Score = 146 bits (354), Expect = 4e-34
Identities = 65/140 (46%), Positives = 100/140 (71%), Gaps = 2/140 (1%)
Frame = +3
Query: 243 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 422
KK ++LN+GP HP HG + + +L+GE + D +G LHRG EKL E++ Y Q L
Sbjct: 214 KKKAQIVLNWGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLV 273
Query: 423 YFDRLDYVSMMCNEQCYSLAVEKLLNI--DVPLRAKYIRTLFAEITRLLNHIMAVGTHAL 596
Y DR+DY+S +C+ Q + +A+E+L+ I VP +AKYIRT+ +E+ R+ +H++ +GT+AL
Sbjct: 274 YTDRMDYLSALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYAL 333
Query: 597 DVGALTPFFWLFEEREKMME 656
D+GALT F + F+EREK+M+
Sbjct: 334 DLGALTIFLYAFKEREKIMD 353
>UniRef50_P21301 Cluster: NADH-ubiquinone oxidoreductase 49 kDa
subunit homolog; n=3; Trypanosomatidae|Rep:
NADH-ubiquinone oxidoreductase 49 kDa subunit homolog -
Trypanosoma brucei brucei
Length = 386
Score = 146 bits (354), Expect = 4e-34
Identities = 69/131 (52%), Positives = 85/131 (64%)
Frame = +3
Query: 270 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 449
FGPQHPAAHGVL +L GE + D IG LHRGTEKL EYK+ Q LPYFDRLDYVS
Sbjct: 15 FGPQHPAAHGVLCCLLYFCGEFIVYIDCIIGYLHRGTEKLCEYKSVEQCLPYFDRLDYVS 74
Query: 450 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 629
+ CNE SL E +L + LR ++R L E TR N ++ + LD+G L+P W
Sbjct: 75 VCCNEHLLSLCFEYMLRCCLSLRCAFMRLLIVEFTRSFNGLLCISCMVLDLGCLSPLLWS 134
Query: 630 FEEREKMMEFY 662
FEER+K+M F+
Sbjct: 135 FEERDKLMTFF 145
>UniRef50_A4XCQ7 Cluster: NADH dehydrogenase; n=5;
Actinomycetales|Rep: NADH dehydrogenase - Salinispora
tropica CNB-440
Length = 388
Score = 145 bits (352), Expect = 7e-34
Identities = 66/132 (50%), Positives = 94/132 (71%)
Frame = +3
Query: 255 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 434
+M+LN GPQHP+ HGVLRL L LDGE V +A+P +G +HRG EKL E + Y Q + +R
Sbjct: 27 DMVLNIGPQHPSTHGVLRLRLVLDGERVVSAEPVVGYMHRGAEKLFEVRDYRQIIVLANR 86
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
D++S NE LAVE+LL ++VP RA ++R AE+ R+LNH+M +G++ L++GA+T
Sbjct: 87 HDWLSAFANELGVVLAVERLLGMEVPERATWLRMALAELNRVLNHLMFLGSYPLEIGAIT 146
Query: 615 PFFWLFEEREKM 650
P F+ F ERE +
Sbjct: 147 PMFYAFRERETL 158
>UniRef50_A7H9U8 Cluster: NADH dehydrogenase; n=2;
Anaeromyxobacter|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 381
Score = 144 bits (350), Expect = 1e-33
Identities = 61/145 (42%), Positives = 98/145 (67%)
Frame = +3
Query: 225 IIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 404
I++ ++ M+LNFGPQHP+ HGV+ ++E DGE ++ A P +G LHR EK+ E
Sbjct: 5 ILRRVDRNNEEMVLNFGPQHPSTHGVINFIVETDGEVMKRAIPDVGYLHRSIEKIGEVTG 64
Query: 405 YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVG 584
Y +P+ DR+DYV+ M + Y++AVEKLL ++VP RA+++R + E+ R+ +H++AVG
Sbjct: 65 YPGFMPFTDRIDYVAAMFANEGYAIAVEKLLKVEVPPRAQWLRAISGELVRIASHLIAVG 124
Query: 585 THALDVGALTPFFWLFEEREKMMEF 659
T +D+GA TP ERE++ ++
Sbjct: 125 TMTMDIGAFTPMVHGLREREEINDY 149
>UniRef50_A5UXK3 Cluster: NADH dehydrogenase; n=3; Chloroflexi
(class)|Rep: NADH dehydrogenase - Roseiflexus sp. RS-1
Length = 374
Score = 142 bits (345), Expect = 5e-33
Identities = 67/140 (47%), Positives = 91/140 (65%), Gaps = 1/140 (0%)
Frame = +3
Query: 246 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 425
+ + + +N GPQHP+ HGV R+++ +DGET+ P G LHR E+L E TY Q++PY
Sbjct: 3 QTQELQINIGPQHPSTHGVFRMIVTVDGETIVDLKPVFGYLHRNHEQLAEVSTYIQSMPY 62
Query: 426 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
DRLDY + M N +LAVEKL I VP RA+YIR L E+TR+LNH AVG D+G
Sbjct: 63 TDRLDYFNSMANNHALALAVEKLAGISVPQRAEYIRVLMVELTRILNHASAVGFLLNDMG 122
Query: 606 A-LTPFFWLFEEREKMMEFY 662
A TP + EREK+++ +
Sbjct: 123 AWQTPLMFGMREREKILDLF 142
>UniRef50_A7H9V5 Cluster: NADH dehydrogenase; n=4;
Cystobacterineae|Rep: NADH dehydrogenase -
Anaeromyxobacter sp. Fw109-5
Length = 431
Score = 141 bits (342), Expect = 1e-32
Identities = 69/142 (48%), Positives = 93/142 (65%)
Frame = +3
Query: 219 NSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEY 398
N + P K+ M +N GP HPA HGV R V+ELDGE +R+ IG LHRG EK E
Sbjct: 37 NELDAPLASKL--MTVNLGPSHPAMHGVTRAVVELDGEMIRSMKLDIGFLHRGFEKSCEN 94
Query: 399 KTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMA 578
T+TQ PY DRL+YVS + N ++LAVEKL +DVP RAKY+R + +EI R+ +H+
Sbjct: 95 VTWTQCFPYTDRLNYVSSIMNNVGFALAVEKLCKLDVPERAKYLRVVTSEIHRICDHLTL 154
Query: 579 VGTHALDVGALTPFFWLFEERE 644
VG A+++GA+T F + E R+
Sbjct: 155 VGAMAMELGAMTVFLYAIEARD 176
>UniRef50_Q6MDR3 Cluster: Putative NADH-ubiquinone oxidoreductase
chain C/D; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Putative NADH-ubiquinone oxidoreductase chain
C/D - Protochlamydia amoebophila (strain UWE25)
Length = 402
Score = 138 bits (334), Expect = 1e-31
Identities = 66/145 (45%), Positives = 95/145 (65%)
Frame = +3
Query: 228 IKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTY 407
+K E+ M LN GPQHP+ HGVLRL L L+GE V + DP IG LH G EK E +TY
Sbjct: 9 LKELEESGDVMELNLGPQHPSTHGVLRLKLRLEGEVVLSCDPVIGYLHTGVEKECESRTY 68
Query: 408 TQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGT 587
Q DRLDY+S EQ ++ A+E+L+NI+VP RA+ IR + E++R+ +H++ GT
Sbjct: 69 HQVFTLVDRLDYLSGPAEEQAFAGALERLMNIEVPERAQTIRIILLELSRIASHLLWAGT 128
Query: 588 HALDVGALTPFFWLFEEREKMMEFY 662
AL++ + F + F EREK+++ +
Sbjct: 129 SALELNMSSVFMYSFAEREKILDLF 153
>UniRef50_Q190M8 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Desulfitobacterium hafniense|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Desulfitobacterium hafniense (strain DCB-2)
Length = 370
Score = 138 bits (333), Expect = 1e-31
Identities = 59/135 (43%), Positives = 91/135 (67%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
++LN GPQHP+ HGV R+V+ L GETV +P IG LHRG EK+ E +TY Q +PY DRL
Sbjct: 12 LLLNMGPQHPSMHGVFRMVVRLQGETVTGIEPKIGYLHRGLEKIAESRTYPQFIPYTDRL 71
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
DY++ N Y VEKL+ +++P RA+Y+R + AE+ R +H + + + ALD+ T
Sbjct: 72 DYLASPHNNLAYVQTVEKLMGLEIPERAEYLRIILAELARFASHQVFIASAALDMAGWTA 131
Query: 618 FFWLFEEREKMMEFY 662
+ + F +RE++++ +
Sbjct: 132 WGYPFRDRERILDLF 146
>UniRef50_Q67P19 Cluster: NADH dehydrogenase I subunit D; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase I
subunit D - Symbiobacterium thermophilum
Length = 404
Score = 137 bits (331), Expect = 3e-31
Identities = 64/144 (44%), Positives = 94/144 (65%), Gaps = 3/144 (2%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
E++ M L+ GP HPA HGVLR+ LEL+GETV A+P G LH G EK E+ T+ QA
Sbjct: 11 EQRPERMTLSIGPHHPATHGVLRVKLELEGETVVKAEPETGFLHTGIEKTAEHLTWNQAT 70
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNID--VPLRAKYIRTLFAEITRLLNHIMAVGTHA 593
DR+DY+S + N Y +AVEKLL I+ +P +A+ R + E+ R+ +H++ +GT
Sbjct: 71 TVMDRMDYLSPISNNTGYVMAVEKLLGIEDRIPEKARVTRVILLELNRVASHLVGLGTGG 130
Query: 594 LDVGAL-TPFFWLFEEREKMMEFY 662
LD G + TP FW FE R+++++ +
Sbjct: 131 LDYGNIGTPIFWAFELRDRILDIF 154
>UniRef50_Q746S4 Cluster: NADH dehydrogenase I, B/C/D subunits;
n=32; Proteobacteria|Rep: NADH dehydrogenase I, B/C/D
subunits - Geobacter sulfurreducens
Length = 792
Score = 136 bits (330), Expect = 3e-31
Identities = 63/133 (47%), Positives = 89/133 (66%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
+ILN GPQHP HG++R VL+LDGE + D IG HRG EK+ E + + Q +PY DR+
Sbjct: 409 LILNLGPQHPGTHGIIRFVLKLDGEEIVDMDTDIGYHHRGAEKIGERQHWNQFIPYTDRI 468
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
DY++ + N Y +VE+L I VP R IR + AE+ R+ NH++ +GT A DVGA+TP
Sbjct: 469 DYLAGVQNNLAYVNSVERLCGITVPDRGIAIRVMLAELFRIANHLVWLGTFAADVGAMTP 528
Query: 618 FFWLFEEREKMME 656
F+ F +REK+ +
Sbjct: 529 VFYTFTDREKIFD 541
>UniRef50_Q6MIR5 Cluster: NADH dehydrogenase I,D subunit; n=1;
Bdellovibrio bacteriovorus|Rep: NADH dehydrogenase I,D
subunit - Bdellovibrio bacteriovorus
Length = 560
Score = 136 bits (328), Expect = 6e-31
Identities = 61/129 (47%), Positives = 89/129 (68%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
LN GP H A HG LR++ E+DGET+ + IG LHR EK+ E Y Q +PY DRL+Y
Sbjct: 179 LNIGPSHTAMHGTLRVMAEMDGETIVRCNNEIGYLHRCFEKMAETHPYNQVIPYTDRLNY 238
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
S N Y AVE+LL +++P +A+ +R + AE++R+++H +A+GT A+D+GALT FF
Sbjct: 239 CSAPMNNIGYCKAVERLLGVEIPPKAQAMRVILAELSRIIDHTIAIGTGAMDLGALTSFF 298
Query: 624 WLFEEREKM 650
++F REK+
Sbjct: 299 YMFGMREKV 307
>UniRef50_P56753 Cluster: NAD(P)H-quinone oxidoreductase chain H,
chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain
H); n=129; cellular organisms|Rep: NAD(P)H-quinone
oxidoreductase chain H, chloroplast (EC 1.6.5.-)
(NAD(P)H dehydrogenase, chain H) - Arabidopsis thaliana
(Mouse-ear cress)
Length = 393
Score = 134 bits (325), Expect = 1e-30
Identities = 62/135 (45%), Positives = 87/135 (64%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
MI+N GP HP+ HGVLRL++ LDGE V +P +G LHRG EK+ E + Q LPY R
Sbjct: 11 MIVNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRW 70
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
DY++ M E E+L NI VP RA YIR + E++R+ +H++ +G D+GA TP
Sbjct: 71 DYLATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTP 130
Query: 618 FFWLFEEREKMMEFY 662
FF++F ERE + + +
Sbjct: 131 FFYIFREREFVYDLF 145
>UniRef50_P65570 Cluster: NADH-quinone oxidoreductase subunit D;
n=41; Bacteria|Rep: NADH-quinone oxidoreductase subunit
D - Mycobacterium bovis
Length = 440
Score = 132 bits (320), Expect = 5e-30
Identities = 62/137 (45%), Positives = 91/137 (66%), Gaps = 2/137 (1%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
+++N GPQHP+ HGVLRL+LE++GETV A IG LH G EK +EY+ +TQ + + R+
Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98
Query: 438 DYVSMMCNEQCYSLAVEKLLNI--DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
DY+S NE Y L VEKLL I ++P R IR L E+ R+ +H++A+ T +++GA+
Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158
Query: 612 TPFFWLFEEREKMMEFY 662
TP F F RE ++ +
Sbjct: 159 TPMFVGFRAREIVLTLF 175
>UniRef50_Q8A0F6 Cluster: NADH dehydrogenase I, chain D; n=8;
Bacteroidetes|Rep: NADH dehydrogenase I, chain D -
Bacteroides thetaiotaomicron
Length = 538
Score = 131 bits (317), Expect = 1e-29
Identities = 64/162 (39%), Positives = 99/162 (61%), Gaps = 3/162 (1%)
Frame = +3
Query: 186 ESTKSLKPVPYNSIIKPAEKKV---RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPH 356
++T+ ++ P + IK E K+ ++N GPQHPA HGV+R + L+GE +R D +
Sbjct: 154 DTTQEIELNP-DGTIKNREMKLFGEEEYVVNIGPQHPATHGVMRFRVSLEGEIIRKIDAN 212
Query: 357 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 536
G +HRG EK+ E TY Q L DRLDY+ N + +EK + I+V R KYIRT
Sbjct: 213 CGYIHRGIEKMNESLTYPQTLALTDRLDYLGAHQNRHALCMCIEKAMGIEVSDRVKYIRT 272
Query: 537 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
+ E+ R+ +H++ A+D+GALT FF+ F +REK+++ +
Sbjct: 273 IMDELQRIDSHLLFYSALAMDLGALTAFFYGFRDREKILDIF 314
>UniRef50_P0A1Y6 Cluster: NADH-quinone oxidoreductase subunit C/D;
n=95; cellular organisms|Rep: NADH-quinone
oxidoreductase subunit C/D - Salmonella typhimurium
Length = 600
Score = 130 bits (315), Expect = 2e-29
Identities = 59/133 (44%), Positives = 86/133 (64%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
M LN GP HP+AHG R++L+LDGE + P IG HRG EK+ E +++ +PY DR+
Sbjct: 216 MFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRI 275
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
+Y+ NE Y LAVEKL I VP R IR + +E+ R+ +H++ + T DVGA+TP
Sbjct: 276 EYLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTP 335
Query: 618 FFWLFEEREKMME 656
F+ F +R+K+ +
Sbjct: 336 VFFAFTDRQKIYD 348
>UniRef50_A1ALP2 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 403
Score = 125 bits (301), Expect = 1e-27
Identities = 57/134 (42%), Positives = 84/134 (62%)
Frame = +3
Query: 255 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 434
++++N GP HPA HG ++++ LDGE V AD H G LHRG EK E+ TY + +P+ DR
Sbjct: 19 HVLVNMGPSHPATHGTIQIIAALDGERVAKADIHCGYLHRGFEKESEHHTYHKIIPFTDR 78
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
L+Y S + N Y VEKLL I++ R Y+RTL AE R+ +H+ V +++GA+T
Sbjct: 79 LNYCSALNNNFAYVEGVEKLLGIELTPRCIYLRTLLAEYNRVADHVTCVAATVMEMGAMT 138
Query: 615 PFFWLFEEREKMME 656
F +L R+ + E
Sbjct: 139 AFLYLMTIRDYIFE 152
>UniRef50_Q1K3R4 Cluster: NADH dehydrogenase; n=4;
Deltaproteobacteria|Rep: NADH dehydrogenase -
Desulfuromonas acetoxidans DSM 684
Length = 374
Score = 124 bits (299), Expect = 2e-27
Identities = 54/139 (38%), Positives = 89/139 (64%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
+++ +LN GPQHP+ HGVLR++LE++GE V P +G HR EK+ E+K +
Sbjct: 9 DERHHRFVLNMGPQHPSTHGVLRVLLEMEGEYVIEPQPVLGYGHRCHEKIAEFKPAKSFM 68
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 599
P R+DY+ + Y+L +EK I+VP RA YIR + +E+ R+ +H++ G + LD
Sbjct: 69 PNTARMDYLGALIYNHGYALLLEKATGIEVPRRADYIRVITSELNRIQSHLLWFGAYLLD 128
Query: 600 VGALTPFFWLFEEREKMME 656
+GA TP + F++RE++++
Sbjct: 129 LGAFTPIMYAFDDREEILD 147
>UniRef50_A0RMD1 Cluster: NADH-quinone oxidoreductase chain c/d;
n=1; Campylobacter fetus subsp. fetus 82-40|Rep:
NADH-quinone oxidoreductase chain c/d - Campylobacter
fetus subsp. fetus (strain 82-40)
Length = 561
Score = 124 bits (298), Expect = 3e-27
Identities = 56/140 (40%), Positives = 86/140 (61%)
Frame = +3
Query: 240 EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
E K + LN GP HPA HG +R + LDGE + + IG LHRG EK E +Y Q +
Sbjct: 172 EFKTKYTFLNIGPSHPATHGTIRNFVALDGEKIISCVTEIGYLHRGFEKACENHSYAQII 231
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 599
PY DRL+Y S M N Y+ AVE+ L +++P R ++R + E+ R+++H + +G +D
Sbjct: 232 PYTDRLNYCSAMLNNVGYAKAVEEALGLNLPDRGIFMRVILGELARIIDHEVCLGAMFVD 291
Query: 600 VGALTPFFWLFEEREKMMEF 659
+G LT +++L+ RE++ F
Sbjct: 292 MGGLTNYWYLYNPRERIYNF 311
>UniRef50_Q9P9G0 Cluster: F420H2 dehydrogenase subunit FpoD; n=6;
Archaea|Rep: F420H2 dehydrogenase subunit FpoD -
Methanosarcina mazei (Methanosarcina frisia)
Length = 374
Score = 122 bits (294), Expect = 8e-27
Identities = 54/132 (40%), Positives = 88/132 (66%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRL 437
MI++ GPQHP G RL L+L GET+ A+ +G +H+G EK++E +TY Q + DR+
Sbjct: 10 MIVHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITIVDRI 69
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
Y+ + NE+CY VEKLL+I+ P RA+YIR + E++RL +H++ +G + +G ++
Sbjct: 70 CYLVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIGFVSM 129
Query: 618 FFWLFEEREKMM 653
F + +ERE ++
Sbjct: 130 FMYTIKEREDIL 141
>UniRef50_Q8F7Q2 Cluster: NADH dehydrogenase I, D subunit; n=8;
Bacteria|Rep: NADH dehydrogenase I, D subunit -
Leptospira interrogans
Length = 405
Score = 119 bits (287), Expect = 5e-26
Identities = 55/134 (41%), Positives = 87/134 (64%)
Frame = +3
Query: 255 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 434
++++N GP HPA HG+L+ V+++DGE + A+ IG +HR EKL E TY Q L DR
Sbjct: 21 HLLVNLGPSHPATHGILQNVIQIDGERIVEAESVIGYVHRCFEKLGERYTYNQFLVCTDR 80
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
++YVS N + LAVEK++ I+VP R Y+R + +E++R+++HI+ G +D+GA +
Sbjct: 81 MNYVSTPLNNIGWILAVEKMMQIEVPDRVTYVRMIISELSRIIDHIICTGILGVDLGAFS 140
Query: 615 PFFWLFEEREKMME 656
LF RE + +
Sbjct: 141 GMLHLFHHRENIYQ 154
>UniRef50_Q2C5T4 Cluster: NADH dehydrogenase I, B/C/D subunits; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, B/C/D subunits -
Photobacterium sp. SKA34
Length = 565
Score = 117 bits (281), Expect = 3e-25
Identities = 52/134 (38%), Positives = 82/134 (61%)
Frame = +3
Query: 255 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 434
+M+LN GP HP GV+RL +++ GE + D IG HRG EK+ E T+ +PY DR
Sbjct: 180 SMVLNIGPNHPGTDGVIRLKVKMKGEFIEDLDQEIGFHHRGAEKIAERHTFHNYIPYTDR 239
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
+DY+ + E Y L +E + I+VP RAK +R + E+ R+ +H++ G+ ++G +
Sbjct: 240 IDYLGGVAGELPYLLGLEAMTGIEVPERAKTMRIMLCELFRISSHLVWFGSITHNLGGMA 299
Query: 615 PFFWLFEEREKMME 656
P F+ F EREK+ +
Sbjct: 300 PAFYAFTEREKIFD 313
>UniRef50_Q9HRL9 Cluster: NADH dehydrogenase/oxidoreductase; n=6;
Halobacteriaceae|Rep: NADH dehydrogenase/oxidoreductase
- Halobacterium salinarium (Halobacterium halobium)
Length = 562
Score = 104 bits (249), Expect = 2e-21
Identities = 58/133 (43%), Positives = 78/133 (58%), Gaps = 4/133 (3%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYFDR 434
M LN GP HPA HGVL + LDGE V +P IG LHR E++ + TY Q +PY DR
Sbjct: 191 MFLNIGPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDR 250
Query: 435 LDY-VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GA 608
DY + NE Y+ E L +IDVP A+ +RT+ E+ R+ H++A+GT LD+ G
Sbjct: 251 WDYGPGGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGD 310
Query: 609 LTP-FFWLFEERE 644
T F + +RE
Sbjct: 311 FTAIFMYAMRDRE 323
>UniRef50_UPI00015BB164 Cluster: NADH-ubiquinone oxidoreductase,
chain 49kDa; n=1; Ignicoccus hospitalis KIN4/I|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa - Ignicoccus
hospitalis KIN4/I
Length = 540
Score = 103 bits (247), Expect = 4e-21
Identities = 48/124 (38%), Positives = 76/124 (61%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GPQHPA HG + +L L GE V P +G +HRG E + E K Y + +P DR Y+
Sbjct: 176 GPQHPATHGPVGFLLGLKGEIVEDVIPRLGYVHRGVEWIYEQKEYLKVIPLLDRQCYIDG 235
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ E Y +A+E+++++ V RA+ +R L AE++R+ +H++ +G+ A +V LT F W
Sbjct: 236 IGWEWPYVMALEEIMDVKVDRRAQLLRILAAELSRIQSHLLYIGSFAENVNHLTAFAWTV 295
Query: 633 EERE 644
+RE
Sbjct: 296 RDRE 299
>UniRef50_Q9YC29 Cluster: NuoD homolog; n=4; Thermoprotei|Rep: NuoD
homolog - Aeropyrum pernix
Length = 414
Score = 102 bits (245), Expect = 7e-21
Identities = 54/145 (37%), Positives = 86/145 (59%), Gaps = 2/145 (1%)
Frame = +3
Query: 228 IKPAEKKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT 404
I P++K +++ + GPQHP + G +R+ + +DG+ + ADP IG +HR EKL E +
Sbjct: 19 IIPSKKVAKDLYEIYIGPQHPGS-GHMRITIRVDGDIIVEADPDIGYVHRTMEKLGEIRG 77
Query: 405 YTQALPYFDRLDYVSMMCNEQC-YSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAV 581
+ + +P F+R+ + CN Y LAVEKL+ ++ PLRAKY+RTL EI R+ H+
Sbjct: 78 WIKPIPLFERMA-IHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGF 136
Query: 582 GTHALDVGALTPFFWLFEEREKMME 656
+ +G T + W +RE +E
Sbjct: 137 AIFGVFLGHSTMYMWAMGDREVFIE 161
>UniRef50_Q8ZWW9 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=4; Pyrobaculum|Rep: NADH-ubiquinone oxidoreductase
subunit - Pyrobaculum aerophilum
Length = 430
Score = 102 bits (244), Expect = 9e-21
Identities = 52/162 (32%), Positives = 91/162 (56%), Gaps = 2/162 (1%)
Frame = +3
Query: 183 DESTKSLKPVPYNSIIKPAEKKVRNMILN--FGPQHPAAHGVLRLVLELDGETVRAADPH 356
D + ++ Y I+K + +L+ +GPQHP++ G R ++E+DG+ V P
Sbjct: 24 DNLSLFMRTEEYGLILKEERLEGGRRVLDIFWGPQHPSS-GHTRFIIEVDGDVVVNVTPD 82
Query: 357 IGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRT 536
G +HR EKL E + + Q +P F+RL + Y+LA+E+L DV RA+Y+R
Sbjct: 83 PGYVHRTMEKLGETRHWIQNIPLFERLSLPDAINVTWAYALAIERLAKYDVSPRAQYLRV 142
Query: 537 LFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
+ E++R+ H+ +G HA+ +G+ T F W + RE +++ +
Sbjct: 143 IMGELSRISTHLYDLGLHAIMIGSSTGFMWAYGLRELLVQLW 184
>UniRef50_Q980H3 Cluster: NADH dehydrogenase subunit D; n=2;
Sulfolobaceae|Rep: NADH dehydrogenase subunit D -
Sulfolobus solfataricus
Length = 410
Score = 101 bits (243), Expect = 1e-20
Identities = 48/127 (37%), Positives = 77/127 (60%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
LN GPQHP + G +R+ ++L+G+ + D +G +HR EKL E + Y +P +R
Sbjct: 30 LNVGPQHPGS-GHMRIFVKLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPAI 88
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ + Y +AVEK+L +DVP RA+Y+R+ AE+ R+ +H+ +G A+ +G T F
Sbjct: 89 LDSIHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTGFM 148
Query: 624 WLFEERE 644
W F +RE
Sbjct: 149 WGFGDRE 155
>UniRef50_Q9X0U3 Cluster: NADH dehydrogenase, 49 kDa subunit,
putative; n=4; Thermotogaceae|Rep: NADH dehydrogenase,
49 kDa subunit, putative - Thermotoga maritima
Length = 368
Score = 98.7 bits (235), Expect = 1e-19
Identities = 46/133 (34%), Positives = 76/133 (57%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
L FGP HP HG + + ++G+ V+ A P G LHRG EKL+E + + + R+
Sbjct: 6 LFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRICV 65
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
NE CY++A+EK+ ++VP RA++IR + E+ R+ NHI VG +G T
Sbjct: 66 PEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTASH 125
Query: 624 WLFEEREKMMEFY 662
W +R+++++ +
Sbjct: 126 WGVADRDRILDIF 138
>UniRef50_A0RY68 Cluster: NADH-ubiquinone oxidoreductase, subunit D;
n=2; Thermoprotei|Rep: NADH-ubiquinone oxidoreductase,
subunit D - Cenarchaeum symbiosum
Length = 379
Score = 94.7 bits (225), Expect = 2e-18
Identities = 47/136 (34%), Positives = 81/136 (59%), Gaps = 1/136 (0%)
Frame = +3
Query: 252 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 431
R M LN GPQHP + G +RLV+++DG+ + + DP G +HRG EK+ EY+ + +P+ +
Sbjct: 17 RIMTLNVGPQHPGS-GHMRLVVKIDGDYIVSCDPDPGYVHRGEEKMAEYRNFVLNIPHLE 75
Query: 432 RLDYVSMMCN-EQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGA 608
R + CN Y LA E ++ ++VP RAKY+R + +E+ + + + + + +G
Sbjct: 76 R-PVIHDSCNILYPYCLAAEDIIGVEVPERAKYVRVIASELNKCIYIQYWLAIYGIFLGH 134
Query: 609 LTPFFWLFEEREKMME 656
T F W +RE +++
Sbjct: 135 STMFMWPAGDRELLID 150
>UniRef50_A2Q588 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; Respiratory-chain NADH dehydrogenase, subunit 1;
n=2; core eudicotyledons|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa; Respiratory-chain NADH
dehydrogenase, subunit 1 - Medicago truncatula (Barrel
medic)
Length = 288
Score = 94.3 bits (224), Expect = 2e-18
Identities = 49/97 (50%), Positives = 61/97 (62%)
Frame = +3
Query: 234 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 413
PA +K MI+N GPQHP+ HGVLRL++ LDGE V +P +G LHRG EK+ E +T Q
Sbjct: 4 PATRKDL-MIVNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQ 62
Query: 414 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAK 524
LPY R DY++ M E E+L NI VP R K
Sbjct: 63 YLPYVTRWDYLATMFTEAITVNGPEQLGNIQVPKRMK 99
>UniRef50_A1RZ50 Cluster: NADH dehydrogenase; n=1; Thermofilum
pendens Hrk 5|Rep: NADH dehydrogenase - Thermofilum
pendens (strain Hrk 5)
Length = 404
Score = 94.3 bits (224), Expect = 2e-18
Identities = 46/131 (35%), Positives = 76/131 (58%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
L GPQHP++ G +R ++ L G+ + + DP IG +HR EKL E + +A+P +RL
Sbjct: 25 LFIGPQHPSS-GHMRFIVRLQGDVIVSVDPDIGYVHRTMEKLAEGREAIKAIPLLERLTI 83
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ A+E+LL+++ P RA Y+RTL +EI R+ +H+ +G + + T F
Sbjct: 84 IDSHNATVGLVTAMERLLDVEPPPRALYLRTLLSEINRIASHLYGMGIAGIMLNHSTMFM 143
Query: 624 WLFEEREKMME 656
W F +RE ++
Sbjct: 144 WAFGDREVWLQ 154
>UniRef50_A0L9R4 Cluster: NADH dehydrogenase; n=2; Bacteria|Rep:
NADH dehydrogenase - Magnetococcus sp. (strain MC-1)
Length = 391
Score = 90.2 bits (214), Expect = 4e-17
Identities = 48/128 (37%), Positives = 72/128 (56%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GPQHP G + + L L G+ + A H+G LHRG EKL+E +T+ Q P R+
Sbjct: 34 GPQHPGITGNMSVELTLCGDEIVDAKTHVGYLHRGFEKLMERRTFIQCFPIVCRVCVPEP 93
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
NE CY+ AVE+L I+ P RA++IRTL E+ R+ +++M +G + G W
Sbjct: 94 DFNEYCYAAAVEELAGIECPERARWIRTLILEMGRINSYLMYLGGQSGAFGMGVIGQWTT 153
Query: 633 EEREKMME 656
R+ M++
Sbjct: 154 YIRDLMLD 161
>UniRef50_A1RZ40 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Thermofilum pendens Hrk 5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Thermofilum pendens (strain Hrk 5)
Length = 537
Score = 87.8 bits (208), Expect = 2e-16
Identities = 46/134 (34%), Positives = 76/134 (56%)
Frame = +3
Query: 255 NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDR 434
++++ GP HPA L +DGE + A IG +HRG EK E +++ + + +R
Sbjct: 152 SVVVPVGPYHPAFKEPEYFSLVVDGERIVKAFVRIGFVHRGIEKAAESRSFFRDIFLVER 211
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
+ + + C+ AVE+LLN++VP RA Y+RTL AE+ R+ +H + +G G T
Sbjct: 212 ICGICSTSHAWCFVEAVERLLNMEVPRRAAYLRTLVAELERIHSHALWLGLVGYWTGFET 271
Query: 615 PFFWLFEEREKMME 656
F W++ RE +M+
Sbjct: 272 MFMWVWGLRETIMD 285
>UniRef50_Q0W3I1 Cluster: Ech hydrogenase, subunit E; n=1;
uncultured methanogenic archaeon RC-I|Rep: Ech
hydrogenase, subunit E - Uncultured methanogenic
archaeon RC-I
Length = 359
Score = 87.4 bits (207), Expect = 3e-16
Identities = 45/133 (33%), Positives = 72/133 (54%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
+ FGPQHP +RL L LDGE V+ + G +HRG EK E+ Y +A +R+
Sbjct: 5 VQFGPQHPVWIEPIRLKLALDGELVKDVELEAGYVHRGLEKKFEWD-YNKAAYLAERVCG 63
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ + C+ LAVE + +++P RA IR + E+ RL +H++A+G +G F
Sbjct: 64 ICTQHHSTCFCLAVESTMKLEIPRRAAVIRNIMLELERLHSHLLAIGLTLEAIGFENLFM 123
Query: 624 WLFEEREKMMEFY 662
F RE +++ +
Sbjct: 124 LCFRNREIVLDVF 136
>UniRef50_A7I491 Cluster: NADH dehydrogenase; n=2; cellular
organisms|Rep: NADH dehydrogenase - Methanoregula boonei
(strain 6A8)
Length = 359
Score = 86.6 bits (205), Expect = 5e-16
Identities = 44/135 (32%), Positives = 78/135 (57%)
Frame = +3
Query: 252 RNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFD 431
+ + + FGPQHP + L L L+ E V P IG +HRG EKL+E + Y + + +
Sbjct: 3 KQITVPFGPQHPVLPEPIHLDLVLEDERVVDVIPSIGYVHRGLEKLVEKREYPEYIYVAE 62
Query: 432 RLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
R+ + + Y+ VE ++ I+VP RA+Y+RT++ E +RL +H++ +G A +G
Sbjct: 63 RICGICSYIHSNTYAECVEHIMKIEVPERAQYLRTIWTEYSRLHSHLLWLGLFADGMGFE 122
Query: 612 TPFFWLFEEREKMME 656
+ F ++ RE +++
Sbjct: 123 SVFMNAWKLREHILD 137
>UniRef50_Q8RDB4 Cluster: NADH:ubiquinone oxidoreductase 49 kD
subunit 7; n=17; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase 49 kD subunit 7 - Thermoanaerobacter
tengcongensis
Length = 360
Score = 86.2 bits (204), Expect = 6e-16
Identities = 47/129 (36%), Positives = 72/129 (55%)
Frame = +3
Query: 270 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 449
FGPQHP + L L ++ E V A P G +HRG E L++ + + Q + D + +
Sbjct: 9 FGPQHPVLPEPIHLKLIVEDEKVVEAYPAFGYVHRGLELLVKKRDFNQMVYVVDHICGIC 68
Query: 450 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 629
+ + Y AVEKL+ IDVP RAK++R ++AEI R+ +H++ G A G F
Sbjct: 69 SAIHGETYCQAVEKLIGIDVPERAKFLRVIWAEIHRIHSHLLWFGLLADAFGFENLFMLS 128
Query: 630 FEEREKMME 656
+ REK+M+
Sbjct: 129 WRIREKVMD 137
>UniRef50_A6Q8J5 Cluster: NADH-quinone oxidoreductase, chain D; n=2;
Epsilonproteobacteria|Rep: NADH-quinone oxidoreductase,
chain D - Sulfurovum sp. (strain NBC37-1)
Length = 547
Score = 84.6 bits (200), Expect = 2e-15
Identities = 43/133 (32%), Positives = 75/133 (56%)
Frame = +3
Query: 261 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 440
+LN+GP HPA+ G +RL + DGE + + DP IG + R E L+ K + A+ +RL
Sbjct: 182 VLNWGPTHPAS-GPIRLRIHCDGEEIISIDPDIGYVWRALEHLVTKKDFVGAIVAVERLC 240
Query: 441 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPF 620
++ + + Y +AVE++ ++ AK++R L E+ R+ +H M +G ++G T
Sbjct: 241 FMDNINSMTGYCMAVEEIAGTEITEFAKWMRVLLGEVARVSSHFMGLGGFFNNLGLHTLG 300
Query: 621 FWLFEEREKMMEF 659
W + RE ++F
Sbjct: 301 LWNMDVREYFLDF 313
>UniRef50_A7C1S4 Cluster: NADH-ubiquinone oxidoreductase subunit;
n=1; Beggiatoa sp. PS|Rep: NADH-ubiquinone
oxidoreductase subunit - Beggiatoa sp. PS
Length = 380
Score = 84.2 bits (199), Expect = 3e-15
Identities = 45/154 (29%), Positives = 76/154 (49%)
Frame = +3
Query: 201 LKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGT 380
++P Y + PA + L FGP HP G L + L G+ V G LHRG
Sbjct: 1 MRPENYQPVEHPASHEYE---LYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGF 57
Query: 381 EKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRL 560
EK++E + + Q + R+ E+ Y+ AVE L ++VP RA++IR + E++R+
Sbjct: 58 EKIMEERLWIQNVALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRI 117
Query: 561 LNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
H+ G + G + FW +R+ +++ +
Sbjct: 118 AAHLFIAGGTSATTGQYSNMFWGIADRDLILDLF 151
>UniRef50_O28445 Cluster: F420H2:quinone oxidoreductase, 45 kDa
subunit; n=2; Archaea|Rep: F420H2:quinone
oxidoreductase, 45 kDa subunit - Archaeoglobus fulgidus
Length = 413
Score = 84.2 bits (199), Expect = 3e-15
Identities = 52/163 (31%), Positives = 85/163 (52%)
Frame = +3
Query: 168 PVMYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAA 347
PV P E P+P ++ + ++L GPQHP + G +RL++ + G+ ++
Sbjct: 12 PVEPPRELRSLFIPIP-PEYVEDTYRSDDFLVL-VGPQHPGS-GHMRLIVRVRGDIIQEV 68
Query: 348 DPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKY 527
P G +HR EKL E + Y Q +P +R + Y A+E+ L+I+VP RAK+
Sbjct: 69 IPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDAPNFNLGYVRAIEEALDIEVPERAKF 128
Query: 528 IRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMME 656
+RT+ AE+ R+ H+ A+ +G T F + F RE + E
Sbjct: 129 LRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPFGLRELICE 171
>UniRef50_A3DM94 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 375
Score = 83.0 bits (196), Expect = 6e-15
Identities = 46/139 (33%), Positives = 75/139 (53%)
Frame = +3
Query: 246 KVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPY 425
K + + + GPQHP A G + L LDGE V D G LHRG EK++EY+ + L
Sbjct: 3 KAKVLTVFLGPQHPGAPGNVGFKLLLDGERVLDIDLIPGFLHRGFEKMMEYRRWDMDLVM 62
Query: 426 FDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
R+ E Y+ A+E++ I+ P +AKY+R + AE +RL +H++ + A +
Sbjct: 63 SARICVEDPDHIELTYTHAMEQIFGIEPPEKAKYVRVIVAEFSRLASHLLWMMYFAGPIA 122
Query: 606 ALTPFFWLFEEREKMMEFY 662
A W RE++++++
Sbjct: 123 ARYATSWAIAAREEILKWF 141
>UniRef50_A1AUU6 Cluster: NADH dehydrogenase (Ubiquinone) precursor;
n=2; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone) precursor - Pelobacter
propionicus (strain DSM 2379)
Length = 409
Score = 79.8 bits (188), Expect = 5e-14
Identities = 39/128 (30%), Positives = 67/128 (52%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GPQHPA + + GE + +G HRG EK E ++Y Q L +R+ +
Sbjct: 9 GPQHPALKEPANFSITVTGEKIVTTSMRLGYNHRGIEKACEERSYLQCLYLLERICGICS 68
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ Y AVE++ + +P RA YIR+L E+ R+ +H++ +G ++G T + +
Sbjct: 69 HTHSTAYIQAVEEIAGLTIPPRANYIRSLVGELERIHSHLLWLGVAGHEIGFDTLLMYSW 128
Query: 633 EEREKMME 656
+RE +M+
Sbjct: 129 RDRELVMD 136
>UniRef50_Q9V0S5 Cluster: NuoD NADH dehydrognease I, subunit D; n=4;
Thermococcaceae|Rep: NuoD NADH dehydrognease I, subunit
D - Pyrococcus abyssi
Length = 394
Score = 77.8 bits (183), Expect = 2e-13
Identities = 46/143 (32%), Positives = 73/143 (51%)
Frame = +3
Query: 234 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 413
P EK + FGPQH A ++L++DG V A + G LHRG EKL EY+ +
Sbjct: 23 PIEKDTYELF--FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYT 79
Query: 414 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHA 593
+ R+ E YSLAV++++ +VP RA++IRT E+ R+ ++ + +
Sbjct: 80 NIALLLRICVPESDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLS 139
Query: 594 LDVGALTPFFWLFEEREKMMEFY 662
+G T W RE++M +
Sbjct: 140 FKLGVYTAGQWAAAYRERLMRLF 162
>UniRef50_Q57935 Cluster: Uncharacterized protein MJ0515; n=9;
Euryarchaeota|Rep: Uncharacterized protein MJ0515 -
Methanococcus jannaschii
Length = 380
Score = 76.2 bits (179), Expect = 7e-13
Identities = 39/128 (30%), Positives = 69/128 (53%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP HP LR+ L LDGE A+ +G +HRG EK++E K + + +R+ +
Sbjct: 11 GPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLAERVCGICS 70
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ ++ +E + I++P +AKY+R + E+ R+ +H++A + L + T WL
Sbjct: 71 YVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEHETLAMWLL 130
Query: 633 EEREKMME 656
RE +M+
Sbjct: 131 NVREIIMD 138
>UniRef50_Q8U0Z6 Cluster: Mbh12 membrane bound hydrogenase alpha;
n=4; Thermococcaceae|Rep: Mbh12 membrane bound
hydrogenase alpha - Pyrococcus furiosus
Length = 427
Score = 74.9 bits (176), Expect = 2e-12
Identities = 41/139 (29%), Positives = 72/139 (51%), Gaps = 1/139 (0%)
Frame = +3
Query: 243 KKVRNMI-LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
KKV + + FGP HP + ++ LDGE + D +G RG + + + Y Q +
Sbjct: 2 KKVEYWVKIPFGPIHPGLEEPEKFIITLDGERIVNVDVKLGYNLRGVQWIGMRRNYVQIM 61
Query: 420 PYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALD 599
+R+ + + Y AVE++ I+VP RA+YIR + E+ R+ +H++ +G D
Sbjct: 62 YLAERMCGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIVGELERIHSHLLNLGVVGHD 121
Query: 600 VGALTPFFWLFEEREKMME 656
+G T + RE++M+
Sbjct: 122 IGYDTVLHLTWLARERVMD 140
>UniRef50_Q2FTW4 Cluster: NADH dehydrogenase; n=2;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 409
Score = 74.9 bits (176), Expect = 2e-12
Identities = 41/131 (31%), Positives = 71/131 (54%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
L GP HPA + +++GE + D G HRG E + + Q L DR+
Sbjct: 10 LPIGPIHPALKEPINFTFQMNGEVIEKVDFAPGRAHRGIEWMGMRRNPVQILHLCDRICG 69
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ + + ++ AVE++ +I+VP RA Y+RT+ AE R+ +HI+ G A ++G T F+
Sbjct: 70 ICGVHHALVFAQAVEQIADIEVPDRAYYVRTIIAEFERIQSHILWAGVAAHELGFDTLFY 129
Query: 624 WLFEEREKMME 656
++ RE+ ++
Sbjct: 130 LAWQIREESVD 140
>UniRef50_Q6AB32 Cluster: Putative NADH dehydrogenase; n=1;
Propionibacterium acnes|Rep: Putative NADH dehydrogenase
- Propionibacterium acnes
Length = 396
Score = 74.1 bits (174), Expect = 3e-12
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 3/124 (2%)
Frame = +3
Query: 243 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 422
KK L+ G HP G++ + +D + + ++ ++G LHRG EKL E + Y Q
Sbjct: 36 KKYEVTRLDLGHLHPTRSGLVTIATTVDDDVIISSQVNVGTLHRGDEKLFEVRDYRQIPM 95
Query: 423 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNH---IMAVGTHA 593
R D+ + E + A+E + I +P R +IRTL AE +R+ +H + VG H
Sbjct: 96 LASRHDWTAPFIGETGAAHAIEDAMGITIPTRVAWIRTLLAEFSRITSHFTFLSWVGHHC 155
Query: 594 LDVG 605
D G
Sbjct: 156 DDAG 159
>UniRef50_A1RWL3 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Thermofilum pendens Hrk 5|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Thermofilum
pendens (strain Hrk 5)
Length = 567
Score = 74.1 bits (174), Expect = 3e-12
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 1/133 (0%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 434
M + GP H A + + LDGE V D + +HRG EKL E + TY Q +R
Sbjct: 179 MQVPIGPVHAVADEPGQFRVFLDGEKVVDVDYRMFYVHRGIEKLAESRLTYNQVPFIAER 238
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
+ + + Y AVE+ L I+VP RA YIRTL E+ RL +H++ +G G
Sbjct: 239 ICGICGYAHSCAYCQAVEQALGIEVPERALYIRTLMLEVERLHSHLLNLGLACHLAGFDW 298
Query: 615 PFFWLFEEREKMM 653
F F+ REK+M
Sbjct: 299 GFMAFFKAREKVM 311
>UniRef50_A3DNE9 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Staphylothermus marinus F1|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 548
Score = 73.7 bits (173), Expect = 4e-12
Identities = 53/173 (30%), Positives = 85/173 (49%), Gaps = 5/173 (2%)
Frame = +3
Query: 150 VKQFEGPVMYPDESTKSLKPVPYNSIIKPAE---KKVRNMILNFGPQHPAAHGVLRLVLE 320
V +F P +P+ K V Y KP + + + GP HPA H L
Sbjct: 128 VHRFVLPDEWPEGIYPLRKDVEYTYRPKPRKVPRQPPTGQRIPIGPYHPALHEPEYFELY 187
Query: 321 LDGETVRAADPHIGLLHRGTEKLIEYKTYT-QALPYF-DRLDYVSMMCNEQCYSLAVEKL 494
++GE V + + +HRG EKL E + Q +P+ +R+ + + Y+++VE+
Sbjct: 188 VEGEKVVDVEYNGFHVHRGIEKLAEAPRFNYQKIPFLAERICGICGFVHSVSYTMSVERA 247
Query: 495 LNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMM 653
IDVP RA+YIR++ EI RL +H++ +G +G F + REK+M
Sbjct: 248 AKIDVPERAEYIRSIILEIERLHSHLLWIGVVCHLLGYDAGFMHTWRIREKVM 300
>UniRef50_Q0W2B9 Cluster: Hydrogenase, large subunit-like protein;
n=1; uncultured methanogenic archaeon RC-I|Rep:
Hydrogenase, large subunit-like protein - Uncultured
methanogenic archaeon RC-I
Length = 524
Score = 71.7 bits (168), Expect = 1e-11
Identities = 42/128 (32%), Positives = 65/128 (50%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE V + +G +H+G EK+ E TY + + +R +
Sbjct: 173 GPVHAGVIEPGHFRFSVAGEPVLMLEIRMGYVHKGIEKISESMTYDKGVFLSERTSGDNG 232
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
M + Y AVE+L I+VP RA+YIRT+F E+ R+ NH+ VG +LD +
Sbjct: 233 MAHSTAYCQAVEQLAGIEVPDRARYIRTVFLEMERIYNHLGDVGGISLDTAYNVGAQHAY 292
Query: 633 EEREKMME 656
RE+M++
Sbjct: 293 ILRERMLQ 300
>UniRef50_A3DKH4 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Staphylothermus marinus F1|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 406
Score = 71.3 bits (167), Expect = 2e-11
Identities = 41/128 (32%), Positives = 68/128 (53%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GPQHPA H + L DGE + + + G HRG EKL E T+ + + R+ +
Sbjct: 18 GPQHPALHEPVLLKAYADGEEIVNVEINTGYNHRGIEKLGEKNTFYRDIFIVARVCGICN 77
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ + CY A+E++L++ RAKY+R L E R+ +H++ A +G + F +
Sbjct: 78 LVHANCYVRALEEILDMHPNERAKYLRVLAMEFERVHSHMLINAVMAEIIGFDSLFMNIM 137
Query: 633 EEREKMME 656
+RE +M+
Sbjct: 138 LDRENIMK 145
>UniRef50_Q9UYN4 Cluster: Hydrogenase 4, component G or formate
hydrogen lyase, subunit 5; n=1; Pyrococcus abyssi|Rep:
Hydrogenase 4, component G or formate hydrogen lyase,
subunit 5 - Pyrococcus abyssi
Length = 588
Score = 70.9 bits (166), Expect = 2e-11
Identities = 44/128 (34%), Positives = 67/128 (52%), Gaps = 1/128 (0%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDRLDYVS 449
GP H L + GE + D HRG EK+ E + TY Q L +R+ +
Sbjct: 202 GPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERICGIC 261
Query: 450 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWL 629
+ Y++A+E+L ++++P RA+YIRTL E+ R+ NH++ VG A VG T F
Sbjct: 262 GYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGFMHA 321
Query: 630 FEEREKMM 653
+ RE +M
Sbjct: 322 WRIREPVM 329
>UniRef50_P77329 Cluster: Hydrogenase-4 component G; n=19;
Bacteria|Rep: Hydrogenase-4 component G - Escherichia
coli (strain K12)
Length = 555
Score = 70.5 bits (165), Expect = 3e-11
Identities = 44/132 (33%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Frame = +3
Query: 261 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKT-YTQALPYFDRL 437
++ GP H + L +DGE + AD + +HRG EKL E + Y + DR+
Sbjct: 183 VIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRV 242
Query: 438 DYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
+ + Y+ +VE L I+VP RA IR++ E+ RL +H++ +G VG T
Sbjct: 243 CGICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTG 302
Query: 618 FFWLFEEREKMM 653
F F REK M
Sbjct: 303 FMQFFRVREKSM 314
>UniRef50_A6DBV4 Cluster: Ech hydrogenase, subunit EchE, putative;
n=1; Caminibacter mediatlanticus TB-2|Rep: Ech
hydrogenase, subunit EchE, putative - Caminibacter
mediatlanticus TB-2
Length = 363
Score = 69.7 bits (163), Expect = 6e-11
Identities = 45/134 (33%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Frame = +3
Query: 258 MILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYK-TYTQALPYFDR 434
+I+ FG QH A + + + E + D +G +HRG EK K +T R
Sbjct: 7 VIVPFGSQHIALPEPVSFLFTTENEVITDVDVDVGYVHRGIEKAAITKFEFTNVAYLLTR 66
Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALT 614
+ + + Y +EKLL +VP RA+YIR L E+ R+ +HI+A G A VG
Sbjct: 67 ICGFCSITHASGYHHGIEKLLGAEVPKRAEYIRMLVTELDRIHSHILANGHVAEVVGYEN 126
Query: 615 PFFWLFEEREKMME 656
F REK ME
Sbjct: 127 LFMQSVRYREKAME 140
>UniRef50_P16431 Cluster: Formate hydrogenlyase subunit 5 precursor;
n=50; Bacteria|Rep: Formate hydrogenlyase subunit 5
precursor - Escherichia coli (strain K12)
Length = 569
Score = 68.5 bits (160), Expect = 1e-10
Identities = 45/148 (30%), Positives = 71/148 (47%), Gaps = 1/148 (0%)
Frame = +3
Query: 216 YNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIE 395
Y I + +KK N ++ GP H + L +DGE + AD + +HRG EKL E
Sbjct: 168 YEFINELGDKK--NNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAE 225
Query: 396 YKT-YTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 572
+ Y + DR+ + + Y+ +VE + I VP RA+ IR + E+ RL +H+
Sbjct: 226 TRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHL 285
Query: 573 MAVGTHALDVGALTPFFWLFEEREKMME 656
+ +G G + F F RE M+
Sbjct: 286 LNLGLACHFTGFDSGFMQFFRVRETSMK 313
>UniRef50_Q8TY43 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Methanopyrus kandleri|Rep: Ni,Fe-hydrogenase III large
subunit - Methanopyrus kandleri
Length = 409
Score = 68.1 bits (159), Expect = 2e-10
Identities = 37/128 (28%), Positives = 62/128 (48%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP HP LR+ L + GE V +G HRG EK++E + +A +R+ +
Sbjct: 32 GPNHPILKEPLRIKLAVRGEEVVDCKVEMGYCHRGIEKIMEGMPWQKAAFLAERVCGICS 91
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ C+ VEKL D R ++R L E+ R+ +H++A + + T F W
Sbjct: 92 HAHNMCFIGGVEKLAEGDPAPRGLFLRVLVQELDRIQSHLIANAAYFYSIEHETMFVWNM 151
Query: 633 EEREKMME 656
RE++++
Sbjct: 152 NTRERVLD 159
>UniRef50_Q0W6T4 Cluster: [NiFe]-hydrogenase, large subunit; n=1;
uncultured methanogenic archaeon RC-I|Rep:
[NiFe]-hydrogenase, large subunit - Uncultured
methanogenic archaeon RC-I
Length = 486
Score = 66.1 bits (154), Expect = 7e-10
Identities = 45/161 (27%), Positives = 74/161 (45%)
Frame = +3
Query: 174 MYPDESTKSLKPVPYNSIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADP 353
M+ DE+ KP + V + +GP HPA + ++ E V+ AD
Sbjct: 86 MHTDEAAPEKKPQSIQASDHITTMPVST--IPYGPYHPAFIESNYFKMAVEDEVVKKADL 143
Query: 354 HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIR 533
+G HR KL+E + Y + + +R+ + + + LAVE + + VP RA IR
Sbjct: 144 KLGFNHRSIIKLMERRDYYKDIYLAERVCGLCNAHHALSFCLAVENIGQVTVPKRADIIR 203
Query: 534 TLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMME 656
T+ E+ R+ +H+MA+G VG T RE + +
Sbjct: 204 TMICEMERIQSHLMAIGILGDLVGYKTMLMQFLRIREDIQD 244
>UniRef50_Q1PZL4 Cluster: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit; n=1; Candidatus
Kuenenia stuttgartiensis|Rep: Similar to membrane-bound
[NiFe]-hydrogenase-3, large subunit - Candidatus
Kuenenia stuttgartiensis
Length = 531
Score = 65.7 bits (153), Expect = 9e-10
Identities = 36/110 (32%), Positives = 57/110 (51%)
Frame = +3
Query: 327 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 506
G+++ D + H+GTEK+ E YT+AL +R+ V + Y A+EK+ I+
Sbjct: 197 GDSIFYLDAKLFFTHKGTEKIFETMPYTKALFLAERICGVCAASHATGYCQAIEKVAEIE 256
Query: 507 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMME 656
+P RA++IRT+ E+ R+ NHI VG L F RE + +
Sbjct: 257 IPPRARFIRTIVMELERIYNHIGDVGNICAGTAFLLGIAHGFRIREYLQQ 306
>UniRef50_P31895 Cluster: Carbon monoxide-induced hydrogenase; n=9;
Bacteria|Rep: Carbon monoxide-induced hydrogenase -
Rhodospirillum rubrum
Length = 361
Score = 65.3 bits (152), Expect = 1e-09
Identities = 40/128 (31%), Positives = 64/128 (50%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H A + +E+DGE V + D G +HRG E L + Q + +R+ +
Sbjct: 9 GPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLCS 68
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLF 632
+ Q Y +A+E + + VP RA+Y+R + E R+ +H+ V A VG + F +
Sbjct: 69 NSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMHVM 128
Query: 633 EEREKMME 656
E RE M +
Sbjct: 129 EAREIMQD 136
>UniRef50_A1ASR5 Cluster: NADH dehydrogenase (Ubiquinone), 30 kDa
subunit; n=1; Pelobacter propionicus DSM 2379|Rep: NADH
dehydrogenase (Ubiquinone), 30 kDa subunit - Pelobacter
propionicus (strain DSM 2379)
Length = 557
Score = 63.3 bits (147), Expect = 5e-09
Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Frame = +3
Query: 270 FGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYV 446
FGP HP L +DGE VR + ++HRG EKL E +P +R+ +
Sbjct: 175 FGPFHPTLDEPEHFRLYVDGEFVRGCEYRGFMVHRGIEKLSESVLGYNDVPMMAERICGI 234
Query: 447 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 626
+ + AVE + VP RA++IRT+ EI RL +H M VG VG T F
Sbjct: 235 CGCVHSLAFCQAVENGAGVIVPPRAEFIRTIMLEIERLHSHPMWVGLACHLVGFDTLFMQ 294
Query: 627 LFEEREKMM 653
+ RE +M
Sbjct: 295 AWRIREPIM 303
>UniRef50_A3CUR5 Cluster: NADH dehydrogenase; n=3;
Methanomicrobiales|Rep: NADH dehydrogenase -
Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498
/ JR1)
Length = 362
Score = 62.9 bits (146), Expect = 7e-09
Identities = 33/138 (23%), Positives = 71/138 (51%)
Frame = +3
Query: 243 KKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALP 422
KK ++ + GP HP +RL E GE V + +G + +G E+++ + + + +
Sbjct: 2 KKTVDVSIPLGPMHPCWKEPVRLKCETAGERVLKTELELGYMKKGIERIMRGRPWQEVMF 61
Query: 423 YFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV 602
+R+ + + + + +E++ +I VP RA Y+R + E+ R+ +HI+A ++ +
Sbjct: 62 LAERVCGICSVVHNMVFIETMEEISDIPVPPRAAYLRVVVNELDRMASHILANFSYCYTI 121
Query: 603 GALTPFFWLFEEREKMME 656
T +L RE +++
Sbjct: 122 EHETLAMYLLNIRETVLD 139
>UniRef50_Q2RXM4 Cluster: NADH-ubiquinone oxidoreductase; n=1;
Rhodospirillum rubrum ATCC 11170|Rep: NADH-ubiquinone
oxidoreductase - Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255)
Length = 561
Score = 62.5 bits (145), Expect = 9e-09
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 1/141 (0%)
Frame = +3
Query: 234 PAEKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQ 413
P + + I++ GP P L +GE + +D HRG EKL +
Sbjct: 167 PLGNESKATIISVGPFFPTLDEPAYFRLFCEGEEIIGSDYRGFFSHRGIEKLSDTVLDYN 226
Query: 414 ALPYF-DRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTH 590
+P+ +R+ + + CY +AVE I++P RAKYIR++ E+ RL +H++ +G
Sbjct: 227 QVPFMAERVCGICGFVHSACYCMAVEDAAGIEIPPRAKYIRSIMMELERLHSHLLWLGLA 286
Query: 591 ALDVGALTPFFWLFEEREKMM 653
+G T + RE +M
Sbjct: 287 GHYLGFDTVLMQSWRIREPIM 307
>UniRef50_Q0BPG8 Cluster: Formate hydrogenlyase subunit 5; n=1;
Granulibacter bethesdensis CGDNIH1|Rep: Formate
hydrogenlyase subunit 5 - Granulobacter bethesdensis
(strain ATCC BAA-1260 / CGDNIH1)
Length = 517
Score = 62.5 bits (145), Expect = 9e-09
Identities = 49/189 (25%), Positives = 80/189 (42%), Gaps = 1/189 (0%)
Frame = +3
Query: 90 AVHNVXSQS-AGHRWFPDPAFVKQFEGPVMYPDESTKSLKPVPYNSIIKPAEKKVRNMIL 266
A H V S+ H +P A + GP + P E + P+ S + +
Sbjct: 102 AEHGVDSRPWLDHGRWPISAPLSPRPGPPLPPPEQAEWRMTSPFASSFVSSRPDIALHER 161
Query: 267 NFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYV 446
+ GP HP +L L L G +R A+ +G HRG + L+ K A+ R+
Sbjct: 162 SIGPVHPLMREPAQLRLHLHGTLIRQAEWRLGYTHRGIQWLMRGKPLRDAIRIAARITGD 221
Query: 447 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFW 626
+ + + ++ A E L ++ P RA +R L E+ R H+ + A GA T
Sbjct: 222 AALAHGLAFARAAEAALRLEPPPRALLLRGLMNELERCAVHLHVLAATASAAGADTYAAK 281
Query: 627 LFEEREKMM 653
L RE+++
Sbjct: 282 LSAWRERLL 290
>UniRef50_UPI000155B933 Cluster: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial; n=1;
Ornithorhynchus anatinus|Rep: PREDICTED: similar to NADH
dehydrogenase (ubiquinone) Fe-S protein 2, 49kDa
(NADH-coenzyme Q reductase), partial - Ornithorhynchus
anatinus
Length = 127
Score = 61.3 bits (142), Expect = 2e-08
Identities = 30/53 (56%), Positives = 36/53 (67%), Gaps = 2/53 (3%)
Frame = +3
Query: 180 PDESTKSLKPVPYN--SIIKPAEKKVRNMILNFGPQHPAAHGVLRLVLELDGE 332
P S L+ P + + P E+KV N+ LNFGPQHPAAHGVLRLV+EL GE
Sbjct: 74 PPASAPELRGSPPDPADVDPPKERKVANVTLNFGPQHPAAHGVLRLVMELSGE 126
>UniRef50_Q10884 Cluster: POSSIBLE FORMATE HYDROGENASE HYCE; n=10;
Actinomycetales|Rep: POSSIBLE FORMATE HYDROGENASE HYCE -
Mycobacterium tuberculosis
Length = 492
Score = 58.8 bits (136), Expect = 1e-07
Identities = 34/111 (30%), Positives = 51/111 (45%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GET+ + +HRG EKL + T A+ +R+ +
Sbjct: 148 GPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERISGDTS 207
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
+ +SLA+E L I++P +R L E+ RL NH +G A DVG
Sbjct: 208 AAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVG 258
>UniRef50_Q24ST8 Cluster: Formate hydrogenlyase subunit 5; n=2;
Desulfitobacterium hafniense|Rep: Formate hydrogenlyase
subunit 5 - Desulfitobacterium hafniense (strain Y51)
Length = 554
Score = 58.8 bits (136), Expect = 1e-07
Identities = 37/111 (33%), Positives = 52/111 (46%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GETV D + H+G EKL+E K + L +R+ V
Sbjct: 194 GPVHAGIIEPGHFRFQTIGETVLHLDAQLFYTHKGIEKLLEGKDLEEGLKIVERVCGVCA 253
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
+ + Y AVEKL ++VP RT+ AE+ RL NH+ +G VG
Sbjct: 254 VSHALAYCEAVEKLKGMEVPRWILGWRTVLAELERLYNHVGDIGNLCAGVG 304
>UniRef50_Q58433 Cluster: Uncharacterized protein MJ1027; n=6;
Methanococcales|Rep: Uncharacterized protein MJ1027 -
Methanococcus jannaschii
Length = 377
Score = 58.0 bits (134), Expect = 2e-07
Identities = 40/129 (31%), Positives = 67/129 (51%), Gaps = 1/129 (0%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP HP RL L ++ E ++ A+ IG+ +RG E ++E + +++ +
Sbjct: 13 GPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISILSEKICGICS 72
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDV-GALTPFFWL 629
+ C E+ +I+VP RA+YIR + E+ RL +H++ G HA +V G T F
Sbjct: 73 HIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFG-HAFEVLGFETMAFRA 131
Query: 630 FEEREKMME 656
F RE +M+
Sbjct: 132 FMIREPIMQ 140
>UniRef50_A5FW46 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidiphilium cryptum JF-5|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidiphilium cryptum (strain JF-5)
Length = 476
Score = 56.0 bits (129), Expect = 8e-07
Identities = 36/117 (30%), Positives = 52/117 (44%)
Frame = +3
Query: 261 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 440
+L FGP GE + PH+ L HRG E +T L +R+
Sbjct: 123 VLPFGPVRAGVVESAEFSFFYVGEAILHYVPHLFLKHRGMEDRFVDQTPETGLVLAERVS 182
Query: 441 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
V + + Y+ A+E + VP RA+Y R + AE+ RL NH+ +G H D L
Sbjct: 183 GVGSVAHALAYAQAMEAAAQVAVPGRARYQRVIVAELERLYNHLHYLG-HLADTTTL 238
>UniRef50_Q9V2X7 Cluster: Hydrogenase large subunit; n=4;
Methanobacteriaceae|Rep: Hydrogenase large subunit -
Methanobacterium thermoformicicum
Length = 376
Score = 56.0 bits (129), Expect = 8e-07
Identities = 38/131 (29%), Positives = 66/131 (50%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
+ G H AA R+ L ++ E VR A+ +G+ HRG E+++E +A +++
Sbjct: 12 ITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVCG 71
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
+ + L EK L +++P RA YIR + E+ R+ +H++ + +G T
Sbjct: 72 ICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFSM 131
Query: 624 WLFEEREKMME 656
LF RE +ME
Sbjct: 132 RLFYIRETVME 142
>UniRef50_A0UXP1 Cluster: NADH dehydrogenase; n=1; Clostridium
cellulolyticum H10|Rep: NADH dehydrogenase - Clostridium
cellulolyticum H10
Length = 530
Score = 55.6 bits (128), Expect = 1e-06
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE + + + +HRG EKL E + Y + L + +R+
Sbjct: 177 GPVHAGIIEPGHFRFSVAGEPIINLEAKLYYVHRGLEKLCENQHYMKVLLFSERISGDET 236
Query: 453 MCNEQCYSLAVEKLLNID-VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
N + A+EKL I +P RA Y R LFAE+ R+ H+ + +D + P
Sbjct: 237 FTNSLAFCQAIEKLNGITYIPERAVYSRVLFAELERICGHLGDIQGLCVDTAYIFP 292
>UniRef50_Q0F384 Cluster: Hydrogenase subunit; n=1; Mariprofundus
ferrooxydans PV-1|Rep: Hydrogenase subunit -
Mariprofundus ferrooxydans PV-1
Length = 532
Score = 53.6 bits (123), Expect = 4e-06
Identities = 30/112 (26%), Positives = 51/112 (45%)
Frame = +3
Query: 327 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 506
GE + + +G +H+G E+ ++ K+ + L R+ S + + ++ A E ID
Sbjct: 199 GEHILNMEERLGYVHKGIERAMQSKSAEEGLKVASRISGDSTVAHAWAFAQACEYAGQID 258
Query: 507 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEFY 662
VP RA +IR + E R+ NHI +G D + RE M +
Sbjct: 259 VPRRASFIRAILCERERIANHIGDIGAVCNDAAFAFMLHQMHRLREDMARLH 310
>UniRef50_Q89GK2 Cluster: Blr6343 protein; n=11;
Alphaproteobacteria|Rep: Blr6343 protein -
Bradyrhizobium japonicum
Length = 503
Score = 52.8 bits (121), Expect = 7e-06
Identities = 32/104 (30%), Positives = 47/104 (45%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H GETV + +G H+G E L+ +A+ R+ S
Sbjct: 153 GPVHAGIIEPGHFRFTASGETVARLEQRLGYTHKGIEGLMTGANLERAVQLAGRVSGDST 212
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVG 584
+ +S A E L + VP RA ++R L AE+ RL NH+ +G
Sbjct: 213 VAYAFAFSRAAEAALQLVVPDRAAWLRALLAELERLANHLGDIG 256
>UniRef50_UPI00015BC86A Cluster: UPI00015BC86A related cluster; n=1;
unknown|Rep: UPI00015BC86A UniRef100 entry - unknown
Length = 420
Score = 52.0 bits (119), Expect = 1e-05
Identities = 33/111 (29%), Positives = 52/111 (46%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H L GE + + H+G EKL E KT + L +R+
Sbjct: 76 GPIHAGIIEPGHFRFTLIGEPILKLEIRHFYKHKGIEKLSEGKTPEEGLKLSERISGDHS 135
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
+ + + AVEK+ +ID+P +A+YIR + E+ RL+ ++ DVG
Sbjct: 136 VAHSLAFVKAVEKIYDIDIPPKARYIRAILLELERLMCNLNDFAFIFQDVG 186
>UniRef50_Q8THY6 Cluster: Hydrogenase-3, subunit E; n=4;
Methanomicrobia|Rep: Hydrogenase-3, subunit E -
Methanosarcina acetivorans
Length = 545
Score = 50.8 bits (116), Expect = 3e-05
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE + + + + HRG EKL E K+ ++ + + +
Sbjct: 181 GPVHAGIIEPGHFRFSVIGEPIFSLEIRLFYKHRGIEKLAEGKSPSECVALAEAVSGDES 240
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG---ALTPFF 623
M N + +AVE+ I VP RA+ +R + E+ R+ + + + A+DVG +PF
Sbjct: 241 MANATGFCMAVEQACGISVPERAERLRAIMLELERIYSLLGDLAGMAVDVGFALVASPFS 300
Query: 624 WLFEE 638
L EE
Sbjct: 301 ILREE 305
>UniRef50_Q0LPD5 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Herpetosiphon aurantiacus ATCC 23779|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Herpetosiphon aurantiacus ATCC 23779
Length = 368
Score = 49.6 bits (113), Expect = 7e-05
Identities = 29/104 (27%), Positives = 48/104 (46%)
Frame = +3
Query: 261 ILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLD 440
+L GP HP +R+VL ++GE + + G +RG + + T Q L +
Sbjct: 14 VLPLGPFHPDWQTPMRMVLRVEGEQIADVEFRDGYTNRGISERLTRTTIPQGLHLVSHIC 73
Query: 441 YVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 572
+ + LA+E+LL I+ RA +R L E+ R H+
Sbjct: 74 AADSHAHSLGFCLALEQLLKINASERAAALRLLACEVERATVHL 117
>UniRef50_Q8EYD9 Cluster: Hydrogenase-3 component E; n=4;
Leptospira|Rep: Hydrogenase-3 component E - Leptospira
interrogans
Length = 466
Score = 49.2 bits (112), Expect = 9e-05
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 2/113 (1%)
Frame = +3
Query: 273 GPQHPAA--HGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYV 446
GP H G R +++ GE +R+ D +G RG LI+ K ++PY + +
Sbjct: 110 GPIHAGVIEPGHFRFIVK--GEEIRSLDIRLGFQKRGLIDLIKGKGPKDSIPYAEAISGD 167
Query: 447 SMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
S + +S E+ NI VP + R + E+ R+ HI +G A D+G
Sbjct: 168 STISYAIAFSRIFEEAQNIAVPQELDFARLVLLELERVATHIGDMGAIAGDIG 220
>UniRef50_Q3JMD7 Cluster: Hydrogenase subunit; n=8; pseudomallei
group|Rep: Hydrogenase subunit - Burkholderia
pseudomallei (strain 1710b)
Length = 567
Score = 48.0 bits (109), Expect = 2e-04
Identities = 33/111 (29%), Positives = 46/111 (41%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE V + +G HRG E+L E R+ S
Sbjct: 189 GPIHAGVIEPGHFRFSVVGEKVLRLEERLGYAHRGVERLFERADALAGSRLAARIAGDST 248
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
+ Y +A+E+ L I VP RA +R L E R+ NH+ +G D G
Sbjct: 249 VAFAWAYCMALEQALRIRVPDRALRLRALLLERERVANHLGDLGALGNDAG 299
>UniRef50_A0LSU1 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=1; Acidothermus cellulolyticus 11B|Rep:
NADH-ubiquinone oxidoreductase, chain 49kDa -
Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
Length = 499
Score = 45.2 bits (102), Expect = 0.001
Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 7/122 (5%)
Frame = +3
Query: 228 IKPAEKKVRNMILNFG----PQHPAAHGVLRLV---LELDGETVRAADPHIGLLHRGTEK 386
+ P E + + +L G P P GV V +E GE + + HRG E+
Sbjct: 121 LTPDEAAIPSRVLGHGVFTIPHGPVRSGVYESVEYLVETPGEDIPYVGIRVFAKHRGIER 180
Query: 387 LIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLN 566
E + + +R++ ++ + + + AVE L + R + +R +FAE+ R+ N
Sbjct: 181 RFEDLDVSDGVLLAERVEGIASVAHALAFCHAVEDLAGVIPSPRDRSVRVIFAELERIAN 240
Query: 567 HI 572
H+
Sbjct: 241 HL 242
>UniRef50_Q3ZW31 Cluster: Hydrogenase, group 4, HycE subunit; n=3;
Dehalococcoides|Rep: Hydrogenase, group 4, HycE subunit
- Dehalococcoides sp. (strain CBDB1)
Length = 526
Score = 44.8 bits (101), Expect = 0.002
Identities = 31/111 (27%), Positives = 48/111 (43%)
Frame = +3
Query: 327 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 506
GE + + + HRG EKL K L + + N YS AVE + +
Sbjct: 196 GEPILNLEVRLFYTHRGLEKLAMGKDIDFGLKIAEGISGDESAANTYAYSSAVEHICSSR 255
Query: 507 VPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFFWLFEEREKMMEF 659
P RA+ +R + E+ RL +H+ + DVG L RE++M +
Sbjct: 256 PPRRAEQLRLILLEMERLYSHLADLSGMLTDVGYPVGAASLSALREELMRW 306
>UniRef50_A6UVJ6 Cluster: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein; n=1; Methanococcus
aeolicus Nankai-3|Rep: Hydrogenase, component E-formate
hydrogenlyase subunit 5-like protein - Methanococcus
aeolicus Nankai-3
Length = 518
Score = 44.4 bits (100), Expect = 0.002
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Frame = +3
Query: 123 HRWFPDPAFVKQFEG-PVMYPDESTKSLKPVPYN-SIIKPAEKKVRNMILNFGPQHPAAH 296
H W + K ++G P ++ + T P+P N + +++ + + GP H
Sbjct: 110 HPWLKSVRYHKNYKGAPDVFGNNYTA---PIPGNYPFYEVGGEEIHQVAV--GPVHAGII 164
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYF-DRLDYVSMMCNEQCY 473
GET+ + + G HRG EK I + LP + + +++ N C+
Sbjct: 165 EPGHFRFNCIGETILSLEIQHGYQHRGIEKQI-LNCKKEVLPLIIESIAGDTVIGNSICF 223
Query: 474 SLAVEKLLNIDVPLRAKYI--RTLFAEITRLLNHIMAVGTHALDVG 605
S A+E L N + R L EI R+ NHI +G A DVG
Sbjct: 224 SEAIEWLSNCNYEANEPLYNYRRLLLEIERIANHIGTMGGLAGDVG 269
>UniRef50_Q4X2T6 Cluster: Putative uncharacterized protein; n=1;
Plasmodium chabaudi|Rep: Putative uncharacterized
protein - Plasmodium chabaudi
Length = 152
Score = 43.2 bits (97), Expect = 0.006
Identities = 20/40 (50%), Positives = 24/40 (60%)
Frame = +2
Query: 338 PCSRSSHRSPAPWY*KTDRIQDIHPSPAVLRPSGLRVHDV 457
P R +HR A + K R QD+HP A+ P GLRVHDV
Sbjct: 113 PACRPAHRPVASRHRKAGRAQDLHPGAALHGPPGLRVHDV 152
>UniRef50_A3ETD4 Cluster: Ni,Fe-hydrogenase III large subunit; n=1;
Leptospirillum sp. Group II UBA|Rep: Ni,Fe-hydrogenase
III large subunit - Leptospirillum sp. Group II UBA
Length = 496
Score = 41.1 bits (92), Expect = 0.023
Identities = 26/111 (23%), Positives = 45/111 (40%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H ++ GE V + +G H+G L+ ++ R+ S
Sbjct: 145 GPVHAGIIEPGHFRFQVVGEKVLRMEERLGYTHKGIRGLLAHRPVGDVTRLSSRISGDSA 204
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVG 605
+ + ++ AVE P RA ++R + E R+ NH+ +G D G
Sbjct: 205 VAFQWAWAQAVECATQTSPPERAVWLRAILLERERIANHLGDLGALGNDAG 255
>UniRef50_Q97TG0 Cluster: Periplasmic hydrogenase large subunit,
dehydrogenase; n=8; Clostridium|Rep: Periplasmic
hydrogenase large subunit, dehydrogenase - Clostridium
acetobutylicum
Length = 471
Score = 40.7 bits (91), Expect = 0.031
Identities = 24/92 (26%), Positives = 44/92 (47%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 476
G L +E+ + A+ GLL RG EK+++ + A+ + +R+ + + +
Sbjct: 15 GFLETKVEVTESVITNAETS-GLLFRGFEKMLKTRQPLDAIYFTERICGICSTAHAMAST 73
Query: 477 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 572
LA+E L + V + Y+R L + NHI
Sbjct: 74 LALEDALKVSVSINDLYVRDLIHSFEFMQNHI 105
>UniRef50_P33374 Cluster: Uptake hydrogenase large subunit; n=22;
Proteobacteria|Rep: Uptake hydrogenase large subunit -
Alcaligenes hydrogenophilus
Length = 621
Score = 40.7 bits (91), Expect = 0.031
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 476
G +R + LD V G + RG E +++ A + +R+ V C+
Sbjct: 28 GHMRCEVNLDANNVIRNAVSTGTMWRGLEVILKRADPADAWAFVERICRVCTGCHALASV 87
Query: 477 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 599
AVE L I +P A IR + A+ ++ +H++ HALD
Sbjct: 88 RAVEDALGIKIPKNAHLIREMMAKTLQVHDHVVHFYHLHALD 129
>UniRef50_A7HGW8 Cluster: NADH-ubiquinone oxidoreductase chain
49kDa; n=11; Bacteria|Rep: NADH-ubiquinone
oxidoreductase chain 49kDa - Anaeromyxobacter sp.
Fw109-5
Length = 515
Score = 40.3 bits (90), Expect = 0.040
Identities = 30/113 (26%), Positives = 50/113 (44%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE V + +G HRG E ++ ++L + + ++
Sbjct: 164 GPVHAGIIEPGHFRFQCHGEQVFHLEIVLGYQHRGIEPMLAGGPDRRSLALVESIAGDTV 223
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGAL 611
+ + + A+E L P RA +R + E+ RL NH+ +G A DVG L
Sbjct: 224 VGHGLAHVKALESLAGRPPPARAMALRGVALELERLANHVGDLGALAGDVGFL 276
>UniRef50_Q609T9 Cluster: Hydrogenase subunit; n=1; Methylococcus
capsulatus|Rep: Hydrogenase subunit - Methylococcus
capsulatus
Length = 527
Score = 38.3 bits (85), Expect = 0.16
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 327 GETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNID 506
GETV + +G +H+G EKL + R+ + + + A+E +
Sbjct: 194 GETVLNLEERLGYVHKGIEKLAVGRDPEGLARLAGRVSGDTTVGHAWAACQAMEHAAGVA 253
Query: 507 VPLRAKYIRTLFAEITRLLNHIMAVG 584
P RA ++R +F E R+ NH+ +G
Sbjct: 254 PPERALWLRAIFIERERVANHLNDIG 279
>UniRef50_P0ACE2 Cluster: Hydrogenase-2 large chain precursor; n=50;
Bacteria|Rep: Hydrogenase-2 large chain precursor -
Shigella flexneri
Length = 567
Score = 38.3 bits (85), Expect = 0.16
Identities = 27/93 (29%), Positives = 43/93 (46%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 476
G LR+ E++ V A G + RG E++++ + A R+ V +
Sbjct: 15 GHLRIDCEIENGVVSKAWAS-GTMWRGMEEIVKNRDPRDAWMIVQRICGVCTTTHALSSV 73
Query: 477 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 575
A E LNIDVP+ A+YIR + +HI+
Sbjct: 74 RAAESALNIDVPVNAQYIRNIILAAHTTHDHIV 106
>UniRef50_Q6APF2 Cluster: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5; n=1; Desulfotalea
psychrophila|Rep: Related to hydrogenase, component
E-formate hydrogenlyase subunit 5 - Desulfotalea
psychrophila
Length = 509
Score = 37.9 bits (84), Expect = 0.22
Identities = 31/115 (26%), Positives = 46/115 (40%)
Frame = +3
Query: 273 GPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSM 452
GP H + GE V + +G HRG EK++ + + + +
Sbjct: 156 GPVHAGIIEPGHFRFQCAGEEVLHLEIQLGYQHRGIEKMLPTLPQKRFPIICESIAGDTS 215
Query: 453 MCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTP 617
+ + A+E L I V AK IRT E+ R+ NHI +G A D P
Sbjct: 216 IGHGLSMCQAIEGLAGISVDRGAKIIRTTALELERICNHIGDLGALAGDAAFNPP 270
>UniRef50_A6Q6W4 Cluster: Ni-Fe hydrogenase, large subunit HycE;
n=2; unclassified Epsilonproteobacteria|Rep: Ni-Fe
hydrogenase, large subunit HycE - Sulfurovum sp. (strain
NBC37-1)
Length = 455
Score = 37.9 bits (84), Expect = 0.22
Identities = 19/79 (24%), Positives = 39/79 (49%)
Frame = +3
Query: 369 HRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAE 548
+RG EK++E KT +A P +R+ + + + V + +++PL + E
Sbjct: 149 YRGIEKMLEGKTLLEAKPVIERISGNESIAYQTAWRDIVCQAAGMELPLSLRKRHAFLLE 208
Query: 549 ITRLLNHIMAVGTHALDVG 605
+ R+++H+ +G D G
Sbjct: 209 MERIIHHLTDLGFIPNDAG 227
>UniRef50_O66895 Cluster: Hydrogenase large subunit; n=5;
Bacteria|Rep: Hydrogenase large subunit - Aquifex
aeolicus
Length = 633
Score = 37.5 bits (83), Expect = 0.28
Identities = 28/103 (27%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADP-HIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCY 473
G LR+ + +D ET + D G + RG E ++ + + R+ V +
Sbjct: 14 GHLRIEIMVDEETGQVKDALSAGTMWRGIELIVRNRDPRDVWAFTQRICGVCTSIHALAS 73
Query: 474 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 599
AVE L I +P A YIR + ++ +H++ HALD
Sbjct: 74 LRAVEDALEITIPKNANYIRNIMYGSLQVHDHVVHFYHLHALD 116
>UniRef50_A5UWP3 Cluster: NADH-ubiquinone oxidoreductase, chain
49kDa; n=2; Roseiflexus|Rep: NADH-ubiquinone
oxidoreductase, chain 49kDa - Roseiflexus sp. RS-1
Length = 358
Score = 36.3 bits (80), Expect = 0.66
Identities = 26/103 (25%), Positives = 41/103 (39%)
Frame = +3
Query: 264 LNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 443
L GP HPA G R +L + + V + G RG + + AL R+
Sbjct: 5 LALGPFHPAWLGPQRFILHIADDRVVDVEYQNGFNERGCAERLPRLPLPDALHLVARICG 64
Query: 444 VSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 572
+ + A+E++ V RA +R AE+ R H+
Sbjct: 65 ECSFAHSLAFCQAIEQVQRRKVGARAALLRVAIAELERTAAHL 107
>UniRef50_A4M0W7 Cluster: Nickel-dependent hydrogenase, large
subunit; n=1; Geobacter bemidjiensis Bem|Rep:
Nickel-dependent hydrogenase, large subunit - Geobacter
bemidjiensis Bem
Length = 559
Score = 36.3 bits (80), Expect = 0.66
Identities = 27/93 (29%), Positives = 44/93 (47%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 476
G LR+ +E +G V A + RG E +++ + A + R V +
Sbjct: 14 GHLRIDVEANGGKVTNAWSS-AQMWRGIEVILKGRAPEDAWSFVQRFCGVCTTVHAISSI 72
Query: 477 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM 575
AVE LN++VPL A+YIR + + +HI+
Sbjct: 73 RAVEHALNVEVPLNAQYIRNIMIAQHSVQDHIV 105
>UniRef50_A4M324 Cluster: Nickel-dependent hydrogenase, large
subunit; n=3; Bacteria|Rep: Nickel-dependent
hydrogenase, large subunit - Geobacter bemidjiensis Bem
Length = 571
Score = 35.1 bits (77), Expect = 1.5
Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
Frame = +3
Query: 297 GVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVSMMCNEQCYS 476
G LR+ LE +G + A RG EK++E + A + R+ V +
Sbjct: 16 GHLRIELEAEGGRIGNAWA-CATQFRGIEKILEGRDPRDAWAFAQRICGVCTGVHAIASI 74
Query: 477 LAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIM-AVGTHALD 599
AVE + +P A+ IR L + + L +H+M HALD
Sbjct: 75 RAVEDAIKCRIPESAELIRNLVSGMATLQDHVMHFYHLHALD 116
>UniRef50_A0H1B0 Cluster: Ni Fe-hydrogenase III large subunit-like;
n=2; Chloroflexus|Rep: Ni Fe-hydrogenase III large
subunit-like - Chloroflexus aggregans DSM 9485
Length = 365
Score = 34.3 bits (75), Expect = 2.7
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +3
Query: 474 SLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHI 572
SLA+E L I PLRA+ IR + AE+ R +H+
Sbjct: 74 SLALEALAEITAPLRAQAIRVIVAELERAASHM 106
>UniRef50_Q978D6 Cluster: Formate hydrogenlyase subunit 3; n=1;
Thermoplasma volcanium|Rep: Formate hydrogenlyase
subunit 3 - Thermoplasma volcanium
Length = 389
Score = 34.3 bits (75), Expect = 2.7
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +3
Query: 414 ALPYFDRLDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLLNHIMAV 581
AL +R++ + + +AVE LNIDVP +Y R + E+ R+ +++ V
Sbjct: 96 ALLLVERINGFHAASHAVAFEMAVEDALNIDVPEEVQYSRIIMLELERMRSNLEVV 151
>UniRef50_UPI0000E1F6B3 Cluster: PREDICTED: hypothetical protein,
partial; n=1; Pan troglodytes|Rep: PREDICTED:
hypothetical protein, partial - Pan troglodytes
Length = 138
Score = 33.5 bits (73), Expect = 4.6
Identities = 16/30 (53%), Positives = 16/30 (53%)
Frame = +3
Query: 81 HIPAVHNVXSQSAGHRWFPDPAFVKQFEGP 170
H P VH SAGHR PDPA EGP
Sbjct: 70 HPPKVHPRADDSAGHRPHPDPAPATAREGP 99
>UniRef50_Q4DZG8 Cluster: Putative uncharacterized protein; n=2;
Trypanosoma cruzi|Rep: Putative uncharacterized protein -
Trypanosoma cruzi
Length = 1951
Score = 33.5 bits (73), Expect = 4.6
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -2
Query: 405 MSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRER 289
+ C+ + F HG+G + D+L + +RP+ ++ A R+R
Sbjct: 1039 VECVLASFSIHGSGPIFVDVLFDVEIRPIRPQEGADRKR 1077
>UniRef50_A4WKM9 Cluster: Methyltransferase type 11; n=4;
Pyrobaculum|Rep: Methyltransferase type 11 - Pyrobaculum
arsenaticum (strain DSM 13514 / JCM 11321)
Length = 252
Score = 33.5 bits (73), Expect = 4.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 504 DVPLRAKYIRTLFAEITRLLNHIMAVGTHALDVGALTPFF 623
D LR +Y RTL+ +I +L+ + G LD+GA T F+
Sbjct: 21 DKYLRTEYYRTLYRKIGEVLDKYINAGMRVLDIGAGTGFW 60
>UniRef50_Q4JSE9 Cluster: Putative membrane protein precursor; n=1;
Corynebacterium jeikeium K411|Rep: Putative membrane
protein precursor - Corynebacterium jeikeium (strain
K411)
Length = 196
Score = 32.7 bits (71), Expect = 8.1
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 434 SGLRVHDVQRAVLQSGRREAAEHRCSSAGQVHQNSVCGDN 553
S L H V R ++ + EAA C S+G +S CGD+
Sbjct: 98 SALGAHTVARLDARAAQLEAANSSCCSSGDATSDSCCGDS 137
>UniRef50_Q3WCX1 Cluster: Cell divisionFtsK/SpoIIIE protein; n=1;
Frankia sp. EAN1pec|Rep: Cell divisionFtsK/SpoIIIE
protein - Frankia sp. EAN1pec
Length = 895
Score = 32.7 bits (71), Expect = 8.1
Identities = 21/57 (36%), Positives = 26/57 (45%)
Frame = -2
Query: 438 PDGRSTAGLGCMSCIRSVFQYHGAGDLCEDLLHGLSLRPVPVRDAAPRERLDAGARS 268
P G T G G + + + A CE L L+ PVRD PRER A AR+
Sbjct: 623 PAGEPTGGPGTSAGLDAEISGPAAAAWCEQLARALA----PVRDPGPRERGPASARA 675
>UniRef50_Q2UB00 Cluster: Polyketide synthase modules and related
proteins; n=1; Aspergillus oryzae|Rep: Polyketide
synthase modules and related proteins - Aspergillus
oryzae
Length = 2429
Score = 32.7 bits (71), Expect = 8.1
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +3
Query: 201 LKPVPYNSIIKPAEKKVR--NMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHR 374
L+PV ++ I ++ N+I+ GP H A G ++ +L D + + P+IGL HR
Sbjct: 814 LRPVLFSQAISTCLDQIPDINLIIEVGP-HTALQGSIKHILH-DTLSEGSVVPYIGLAHR 871
Query: 375 GTEKL 389
G + +
Sbjct: 872 GEDSI 876
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,495,955
Number of Sequences: 1657284
Number of extensions: 13808452
Number of successful extensions: 39358
Number of sequences better than 10.0: 120
Number of HSP's better than 10.0 without gapping: 37957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39321
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50413227838
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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