Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E19
         (664 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0217 - 1712979-1713794                                           31   1.1  
09_02_0295 - 7039870-7040634                                           29   2.5  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   4.4  
06_03_1000 - 26778993-26779478                                         28   5.8  
11_03_0128 - 10437407-10438049,10438097-10438272                       28   7.6  
04_04_0807 - 28192320-28192494,28192611-28192759,28192882-281929...    28   7.6  

>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -2

Query: 528 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 406
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 435 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLL 563
           L Y+S +C   CY  A       DV +RA+Y R  F    R L
Sbjct: 167 LVYISGLCVVYCYMKASNLFSRFDVHVRARYNRLGFVAFCRSL 209


>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
            6653569-6653766,6654485-6654568,6655175-6655920,
            6656480-6657341
          Length = 1194

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +3

Query: 240  EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 419
            E+ V NM  +    H  AHG +RL +E++   +R     + ++ R     + YK      
Sbjct: 1005 EQHVSNMCKSCS-NHARAHGQVRLAMEMEKMNIRLGKEMVTMICRQIIVPVYYKNLMARS 1063

Query: 420  PYFDRL-DYVSMMCN-EQCYSLAVEKL 494
                 L D  S   N    Y+L +EK+
Sbjct: 1064 AMLTCLTDSESQRANGNALYALTIEKM 1090


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 339 GLSLRPVPVRDAAPRERLDAGARSSGSCC 253
           G +LRP  V   APR+   AG R +  CC
Sbjct: 83  GSALRPATVCPPAPRKPRPAGKRMTKRCC 111


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -2

Query: 507 HRCSAASRRPDCSTARCTSWTRSPDGRSTAGLGCMSCIRS 388
           +RC +AS    C ++RC S T S +   + G GC S + S
Sbjct: 218 NRCGSASSW--CPSSRCPSPTASSESLGSWGSGCRSHLSS 255


>04_04_0807 -
           28192320-28192494,28192611-28192759,28192882-28192980,
           28193212-28193433,28193522-28193611,28193837-28193959,
           28194040-28194199,28194288-28194347,28194484-28194574,
           28194667-28194730
          Length = 410

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -2

Query: 498 SAASRRPDCSTARCTSWTRSPDGRST-AGLGCMSCIRSVFQYH---GAGDL 358
           +AA     C+  RC  WT++ +  S   G   + C R +  +H   GAG L
Sbjct: 321 AAAVYTAQCALTRCQQWTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKL 371


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,610,297
Number of Sequences: 37544
Number of extensions: 402183
Number of successful extensions: 1120
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)