Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_E18
(702 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer... 46 7e-06
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 44 2e-05
SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr ... 30 0.28
SPCC162.05 |coq3||hexaprenyldihydroxybenzoate methyltransferase|... 29 0.85
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 28 1.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 27 2.6
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|... 27 3.4
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 26 4.5
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 26 6.0
SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 7.9
>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 339
Score = 45.6 bits (103), Expect = 7e-06
Identities = 36/137 (26%), Positives = 66/137 (48%)
Frame = +1
Query: 262 EDYDYHQEIARSAFADMLHDTERNQKYSKALKLAIEKMHNDGKKANVLDIGTGTGLLSIM 441
+DY + +ML D R Y A+ ++ H K VLD+G GTG+LS+
Sbjct: 16 KDYYFDSYSHWGIHEEMLKDDVRTLSYRDAI---MQNPHLFRDKI-VLDVGCGTGILSMF 71
Query: 442 AAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVIPKRSTELTVGENGDMKQKANIL 621
A++GA + + + ++I+E N ++D++T+I + E+ + +K +I+
Sbjct: 72 CARAGAKHVYGVD-MSEIIHKAVQIVEVNKLSDRITLIQGKMEEIQL-----PVEKVDII 125
Query: 622 XTEVFDTELIGEGALST 672
+E L+ E L T
Sbjct: 126 VSEWMGYFLLYESMLDT 142
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 44.4 bits (100), Expect = 2e-05
Identities = 33/129 (25%), Positives = 55/129 (42%)
Frame = +1
Query: 196 KMKVFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAFADMLHDTERNQKYSKALKLAIEKM 375
KM T + T ++ Y + ML+D+ R + Y
Sbjct: 195 KMNELTSQTTDQLSVTPKKADNDSYYFESYAGNDIHFLMLNDSVRTEGYRD---FVYHNK 251
Query: 376 HNDGKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMAECCLRILECNGVADKVTVI 555
H K VLD+G GTG+LS+ AK+GA + A + + E NG+AD++T I
Sbjct: 252 HIFAGKT-VLDVGCGTGILSMFCAKAGAKKVYAVDNSDIIQMAISNAFE-NGLADQITFI 309
Query: 556 PKRSTELTV 582
+ ++++
Sbjct: 310 RGKIEDISL 318
>SPAC3A11.03 |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 30.3 bits (65), Expect = 0.28
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 400 VLDIGTGTGLLSIMAAKSGA 459
VL++G GTGL+SI+ AK G+
Sbjct: 174 VLELGAGTGLVSILCAKMGS 193
>SPCC162.05 |coq3||hexaprenyldihydroxybenzoate
methyltransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 271
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/38 (50%), Positives = 25/38 (65%)
Frame = +1
Query: 385 GKKANVLDIGTGTGLLSIMAAKSGADTIVACEAFQPMA 498
GKK +LDIG G G+LS A+ GA ++ A +A PMA
Sbjct: 78 GKK--ILDIGCGGGILSESMARLGA-SVTAVDA-SPMA 111
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -1
Query: 552 NSYLISHTIAFQYPETAFSHRLKSLTSNNSV 460
NS ++ + Q E FSH++K LTS N +
Sbjct: 290 NSLIMEYKNELQSAEEHFSHKIKELTSENEL 320
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -1
Query: 507 TAFSHRLKSLTSNNSVST*FCCHYGEEPCTCANI 406
++ SHR K LTS++++ FC G+ P +I
Sbjct: 307 SSLSHRRKLLTSHSTLKICFCRSRGDPPIVLESI 340
>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 503
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 190 GSKMKVFTQKRNPLTGCTEWDMQDEDYDYHQEIARSAF 303
G ++KV++ L C D +ED D ++AR+AF
Sbjct: 37 GGRVKVYSPSTEKLI-CEVADADEEDVDIAVKVARAAF 73
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 352 LKLAIEKMHNDGKKANVLDIGTGTGLLSIMAA 447
L + K + N L++G GTGL+ I AA
Sbjct: 123 LSANLPKWEDLSNSINALELGAGTGLVGISAA 154
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 94 ACKYMNTIYKVTFFNYLLASSHKRFK 171
A KY+N I + F NY L +S K K
Sbjct: 291 ASKYLNAISDIPFLNYELITSTKLAK 316
>SPCPB16A4.04c |trm8||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 273
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 388 KKANVLDIGTGTGLLSIMAAKSGADTIV 471
KK ++DIG G G L++ DT+V
Sbjct: 80 KKVEIVDIGCGYGGLTVALGPQFPDTLV 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,840,626
Number of Sequences: 5004
Number of extensions: 58106
Number of successful extensions: 174
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -