Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_E15
(890 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 286 3e-78
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 202 7e-53
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 162 5e-41
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 155 6e-39
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 154 1e-38
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 141 1e-34
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 137 2e-33
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 118 1e-27
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 58 2e-09
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 30 0.38
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.89
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 28 1.6
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac... 26 6.3
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 26 6.3
SPAC23G3.11 |rpn6||19S proteasome regulatory subunit Rpn6|Schizo... 26 8.3
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 8.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 26 8.3
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 286 bits (702), Expect = 3e-78
Identities = 136/243 (55%), Positives = 187/243 (76%), Gaps = 1/243 (0%)
Frame = +2
Query: 164 YKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSV 343
++D+ KP ++RLSNI AA++VADAIRTSLGP+GMDKMIQ GEV +TNDGATILK +SV
Sbjct: 11 FQDREKPQEVRLSNIMAARSVADAIRTSLGPKGMDKMIQTGKGEVILTNDGATILKHLSV 70
Query: 344 IHPAAKMLVXLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQL 523
+HPAAKMLV LS AQD+E GDGTTSVV++AG++L A KLL+KGIHPTVI++ FQ+A
Sbjct: 71 LHPAAKMLVDLSAAQDVEAGDGTTSVVILAGSMLACAEKLLKKGIHPTVIAESFQRAAGF 130
Query: 524 ALQVVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVG 703
+ ++ + ++L++ ++LL+AA TSLNSK+VSQ+S +LAPIAV A+ V++P V
Sbjct: 131 TVDCMKENALAIELSDRESLLRAATTSLNSKIVSQYSNLLAPIAVDAVLKVIDP---RVA 187
Query: 704 ARVDLRDVKVIERIGGTVXDAXLIQGLVIPHRA-XNVNGPHRIEKAKVGLIQFXISPPKT 880
VDL+D+++++++GG + D LI GL + A + GP RIEKA + LIQF +SPPK
Sbjct: 188 TNVDLKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKP 247
Query: 881 DMD 889
DM+
Sbjct: 248 DME 250
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 202 bits (492), Expect = 7e-53
Identities = 108/228 (47%), Positives = 153/228 (67%), Gaps = 2/228 (0%)
Frame = +2
Query: 200 SNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVXLS 379
S+I A K VA+ +RTSLGPRG+DK++ + +GE+T+TNDGATIL QM V H AK+LV LS
Sbjct: 38 SHILATKTVANIVRTSLGPRGLDKILISPDGEITVTNDGATILDQMEVEHQIAKLLVQLS 97
Query: 380 RAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALQVVENMSTPV 559
++QD E GDGTT VVV+AGALL+ A L+ KGIHP I+DG++KA Q+A++ ++ +S V
Sbjct: 98 KSQDDEIGDGTTGVVVLAGALLEQAEALIDKGIHPIRIADGYEKACQVAVKHLDAISDVV 157
Query: 560 DLNNEDA--LLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKV 733
D + E+ L ++A TSL SKVVS+ A IAV A+ +V + VD +KV
Sbjct: 158 DFSPENTTNLFRSAKTSLGSKVVSKAHDHFANIAVDAVLSVADL----QRKDVDFELIKV 213
Query: 734 IERIGGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKVGLIQFXISPPK 877
++GG+V D L++G+V+ + PHRIE AK+ ++ PPK
Sbjct: 214 DGKVGGSVDDTKLVKGVVVDKDMSHPQMPHRIENAKIAILTCPFEPPK 261
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 162 bits (394), Expect = 5e-41
Identities = 81/221 (36%), Positives = 140/221 (63%), Gaps = 1/221 (0%)
Frame = +2
Query: 194 RLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVX 373
++SNI AAKAVAD IRT LGPR M KM+ G V +TNDG IL+++ V HPAAK ++
Sbjct: 21 QMSNIQAAKAVADVIRTCLGPRAMLKMLLDPVGSVLLTNDGHAILREIEVAHPAAKSMIE 80
Query: 374 LSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALQVVENMST 553
L+R QD E GDGTTSV+++AG +L +A LL + IHP V+ F++AL+ AL +++ ++
Sbjct: 81 LARTQDEEVGDGTTSVIILAGEILAAASPLLDRKIHPVVMIRSFKQALEDALSIIDEITL 140
Query: 554 PVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKV 733
PV++++ + + T + +K+V++ S ++ +A++A+R V S +D++
Sbjct: 141 PVNVDDNAEMFRLIRTCIGTKLVARWSDLMCHLALRAVRTVAS--TSNGRMEIDIKRYAR 198
Query: 734 IERI-GGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKVGLI 853
+E++ GG + + ++ G+++ + RIE ++ L+
Sbjct: 199 VEKVPGGEIESSCVLDGVMLNKDVTHPKMRRRIENPRIVLL 239
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 155 bits (377), Expect = 6e-39
Identities = 86/209 (41%), Positives = 132/209 (63%), Gaps = 4/209 (1%)
Frame = +2
Query: 170 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 349
D S+ LSNINA AV D IRT+LGP G DK++ GEV I+NDGATI+K + ++H
Sbjct: 18 DDSQGRGQLLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVH 77
Query: 350 PAAKMLVXLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLAL 529
PAAK LV ++RAQD E GDGTTSVVV AG LL A ++ G+ +I G++KA QLA+
Sbjct: 78 PAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKAAQLAV 137
Query: 530 QVVENMSTPVDLNNE----DALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSG 697
++ ++ +DL++E D L K A+T++NSK++ +ST + V A+ + + ++
Sbjct: 138 NKIKEIAIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLN- 196
Query: 698 VGARVDLRDVKVIERIGGTVXDAXLIQGL 784
++ +K + GG + D+ L++G+
Sbjct: 197 ----ENMIGIKKVP--GGAMEDSLLVKGV 219
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 154 bits (374), Expect = 1e-38
Identities = 83/237 (35%), Positives = 142/237 (59%), Gaps = 1/237 (0%)
Frame = +2
Query: 170 DKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIH 349
+K D+R N+ A A+A+ +++SLGP G+DKM+ G+VT+TNDGATIL + V H
Sbjct: 15 EKISGEDVRNQNVLATTAIANVVKSSLGPVGLDKMLVDDIGDVTVTNDGATILSLLDVEH 74
Query: 350 PAAKMLVXLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLAL 529
PA K+LV L++ QD E GDGTTSVV+IA LL A +L++ IHPT I G++ A++ A+
Sbjct: 75 PAGKVLVELAQQQDKEVGDGTTSVVIIAAELLRRANELVKNKIHPTTIITGYRLAIREAV 134
Query: 530 Q-VVENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGA 706
+ + + +S VD +++L+ A TS++SK++ S + +AV A+ +V G
Sbjct: 135 KFMTDVLSCSVDSLGKESLINVAKTSMSSKIIGNDSDFFSTMAVDAMLSVKTSNSKG-ET 193
Query: 707 RVDLRDVKVIERIGGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKVGLIQFXISPPK 877
R ++ V +++ G + ++ L++G + + R++ AK+ ++ + K
Sbjct: 194 RYPVKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAVLDMDLQKTK 250
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 141 bits (342), Expect = 1e-34
Identities = 82/223 (36%), Positives = 137/223 (61%), Gaps = 6/223 (2%)
Frame = +2
Query: 194 RLSNINAAKAVADAIRTSLGPRGMDKMIQA-ANGEVTITNDGATILKQMSVIHPAAKMLV 370
RLS+ A AV D ++++LGP+GMDK++Q+ ++G++ +TNDGATILK +++ + AAK+LV
Sbjct: 22 RLSSFVGAIAVGDLVKSTLGPKGMDKILQSNSSGDIVVTNDGATILKSIALDNAAAKVLV 81
Query: 371 XLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALQV----- 535
+S+ QD E GDGTTSV V A LL A ++ IHP VI DG++ A + A+
Sbjct: 82 NISKVQDDEVGDGTTSVCVFAAELLRQAEIMVNAKIHPQVIIDGYRIATKTAIDALRASS 141
Query: 536 VENMSTPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVD 715
++N S P ++ L A T+L+SK++SQ+ A +AV A+ + +
Sbjct: 142 IDNSSDPAKFRSD--LENIARTTLSSKILSQNKNHFAQLAVDAVLRLK--------GSTN 191
Query: 716 LRDVKVIERIGGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKV 844
L ++++I+ +GG + D+ L +G ++ ++ VN P +E A +
Sbjct: 192 LDNIQIIKILGGKLDDSFLDEGFIL-NKTIGVNCPKVMENANI 233
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 137 bits (332), Expect = 2e-33
Identities = 74/229 (32%), Positives = 130/229 (56%)
Frame = +2
Query: 203 NINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPAAKMLVXLSR 382
NI+AA + D ++++LGP G KM+ G + +T DG +L +M + +P A + +
Sbjct: 21 NISAAIGLQDVLKSNLGPTGTTKMLVDGAGAIKLTKDGKVLLTEMQIQNPTASCIAKAAT 80
Query: 383 AQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVD 562
AQD GDGTTSV ++ G LL A +++G+HP++ISDGF A AL +++ T +
Sbjct: 81 AQDDATGDGTTSVCLLVGELLKQAELYIREGLHPSLISDGFNLAKNEALTFLDSFKTDFE 140
Query: 563 LNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIER 742
++ E LL A TSL++K+ S+ LAP V AI + P +DL V++++
Sbjct: 141 VDRE-VLLNVAKTSLSTKISSKVVESLAPAVVDAILTIRRP-----DEPIDLHMVEIMKM 194
Query: 743 IGGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKVGLIQFXISPPKTDMD 889
+ D LI+GL++ H A + + P +++ A + ++ + K++++
Sbjct: 195 QNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEIN 243
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 118 bits (284), Expect = 1e-27
Identities = 72/259 (27%), Positives = 138/259 (53%), Gaps = 2/259 (0%)
Frame = +2
Query: 113 IMAPKAGGDAIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANG 292
+ PKA G + Y+ D + N NA + +++ RTSLGP G +K++
Sbjct: 3 LRVPKASGPQLFREG--YRIMQGVEDAVIRNCNAIRELSEITRTSLGPNGKNKIVVNHLQ 60
Query: 293 EVTITNDGATILKQMSVIHPAAKMLVXLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQK 472
+ +TND ATI++++ VIHPAAK++V ++ Q+ E GD VVV G LL A +++
Sbjct: 61 QTFLTNDAATIIRELEVIHPAAKLVVDATQQQENELGDAANFVVVFTGELLAKAENMIRM 120
Query: 473 GIHPTVISDGFQKALQLALQVVENMSTP--VDLNNEDALLKAAATSLNSKVVSQHSTILA 646
G+ P I+ G++ AL ++V+E + + +E L+KA T ++SK + L+
Sbjct: 121 GLTPLEIAKGYEMALSHTMEVLEEICADKIETVESEKELIKAIRTCISSKQYG-NEDFLS 179
Query: 647 PIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIGGTVXDAXLIQGLVIPHRAXNVNGPHR 826
+ +AI V+ S + ++ +++V++ +G ++ ++ +++G+V P R
Sbjct: 180 DLVAKAILTVLPKDPS----KFNVDNIRVVKIMGSSLYNSQVVKGMVFPREPEGT--VTR 233
Query: 827 IEKAKVGLIQFXISPPKTD 883
++AKV + + +T+
Sbjct: 234 SKEAKVAVFSCPLDISQTE 252
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 57.6 bits (133), Expect = 2e-09
Identities = 41/176 (23%), Positives = 80/176 (45%), Gaps = 5/176 (2%)
Frame = +2
Query: 98 RLNINIMAPKAGGD-AIKANSSVYKDKSKPTDIRLSNINAAKAVADAIRTSLGPRGMDKM 274
RL + I + G A+ + KD D R S + +A A+ +LGP+G + +
Sbjct: 11 RLPLRIAGRRIPGRFAVPQVRTYAKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVL 70
Query: 275 IQAANGEVTITNDGATILKQMSV----IHPAAKMLVXLSRAQDIEXGDGTTSVVVIAGAL 442
I G IT DG T+ + +S+ + A+++ ++ + GDGTT+ V+ A+
Sbjct: 71 IDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAI 130
Query: 443 LDSAXKLLQKGIHPTVISDGFQKALQLALQVVENMSTPVDLNNEDALLKAAATSLN 610
+ + G +P + G Q A+ ++ ++ + D+ + + + A S N
Sbjct: 131 FSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQ--ANKRDITTSEEISQVATISAN 184
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 701 GARVDLRDVKVIERI-GGTVXDAXLIQGLVIPHRAXNVNGPHRIEKAKVGLIQFXI 865
G +D+R I++I GG++ D L+ G++ +A + + + + ++ L+ F +
Sbjct: 516 GDDIDVRSYVKIKKIPGGSIQDCFLVNGVLFSKKASSKSMDRSLRRPRIALLTFSL 571
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 29.1 bits (62), Expect = 0.89
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = +1
Query: 595 CNITKFQSSFTTLNYFGTHCSASNSS 672
CNI KF SSF T N F T SS
Sbjct: 276 CNIPKFNSSFKTSNDFFTFTKTEESS 301
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 28.3 bits (60), Expect = 1.6
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +2
Query: 569 NEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPIVSGVGARVDLRDVKVIERIG 748
+ED L ATS +K S + A++ + ++P +S A +R+ +I
Sbjct: 50 SEDILRTGGATSETTKDASAAGPVTPSFAMKRSQTSVQPSMSSQIAIGGMRNPMATRKIA 109
Query: 749 GTVXDA 766
GT DA
Sbjct: 110 GTYRDA 115
>SPAC18G6.05c |||translation elongation regulator Gcn1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2670
Score = 26.2 bits (55), Expect = 6.3
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +2
Query: 548 STPVDLNNEDALLKAAATSLNSKVVSQHSTILAPIAVQAIRAVMEPI 688
ST D L+ + N ++ H +ILAP +RA++ P+
Sbjct: 2537 STSQDSRRLALLIIRVVSKENYSLIKPHISILAPAIFGCVRAIVIPV 2583
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.2 bits (55), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = -2
Query: 697 TTNNRFHYCSNC--LHCNGCQNS*VL*NYFGI 608
T NR H+C NC + CN C + + + GI
Sbjct: 184 TFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGI 215
>SPAC23G3.11 |rpn6||19S proteasome regulatory subunit
Rpn6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.8 bits (54), Expect = 8.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 5/47 (10%)
Frame = +2
Query: 461 LLQKGIHPTVISDGFQ--KALQLALQVVENMSTPVDL---NNEDALL 586
+L +G ++ D Q K + AL+V++NM T VDL N ALL
Sbjct: 375 ILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKASALL 421
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 8.3
Identities = 29/116 (25%), Positives = 43/116 (37%)
Frame = +2
Query: 176 SKPTDIRLSNINAAKAVADAIRTSLGPRGMDKMIQAANGEVTITNDGATILKQMSVIHPA 355
+K D + A AD + TS M + + ANG+ + S HPA
Sbjct: 1859 TKNRDSLYQKLVARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHPA 1918
Query: 356 AKMLVXLSRAQDIEXGDGTTSVVVIAGALLDSAXKLLQKGIHPTVISDGFQKALQL 523
K ++I + V +AG + L Q + P VI+D K L L
Sbjct: 1919 TKRW----ERREISNFNYLQIVNTLAGRTYND---LTQYPVFPWVIADYTSKELDL 1967
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 25.8 bits (54), Expect = 8.3
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 4/94 (4%)
Frame = +2
Query: 419 VVVIAGALLDSAXKLLQKGIH---PTVISDGFQKALQLALQVVENMSTPVDLNNEDALLK 589
V A LD + +H +I+ AL +VE+ STP L D L+K
Sbjct: 509 VYTYAAIALDQLLTVRHNHVHIFTSLLIAPHILPALNQLFLIVESASTPQKLAENDYLMK 568
Query: 590 AAATSLNSKVVSQHSTI-LAPIAVQAIRAVMEPI 688
A + ++SQ + + A + +Q + + E +
Sbjct: 569 AVMRII---IMSQEAILPAASLLLQHLTKITEEV 599
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,224,691
Number of Sequences: 5004
Number of extensions: 59469
Number of successful extensions: 180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -