Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E11
         (906 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...   278   9e-76
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...   144   2e-35
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    32   0.13 
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   2.8  
SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydro...    27   4.8  

>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score =  278 bits (681), Expect = 9e-76
 Identities = 137/258 (53%), Positives = 181/258 (70%), Gaps = 5/258 (1%)
 Frame = +3

Query: 141 VAAEKKPSKQEEEISPNEYYKLRSGAVAALKNGLKEDHPYPHKFNVSISLEEFIEKYQNL 320
           VAA K  SK+EE++ P++Y++ RS  +  L+   K+ +PYPHKF V+I+L EFI KY+ L
Sbjct: 57  VAAPKSSSKKEEDLDPSQYFENRSRTIMELRQ-TKDPNPYPHKFQVTITLPEFIAKYEGL 115

Query: 321 NNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETEDKFFKDTDK 500
             G+    V ++VAGRV  +R +G KL FY++ A+G K+QVM  A+  +T D F    + 
Sbjct: 116 ARGETKPEVEVAVAGRVLGLRTAGNKLRFYEIHADGKKLQVMCQAQDADTVD-FAAQHEH 174

Query: 501 LRRGDIIGCVGHPGKTKK-----GELSIIPKNIKLLAPCLHMLPHLHFGLKDKETRFRKR 665
           LRRGDIIG  G+PG++       GELSI  +   LL+PCL MLP  H+GLKD E R R+R
Sbjct: 175 LRRGDIIGIRGYPGRSNPKGRADGELSIFARQCVLLSPCLRMLPKEHYGLKDLEIRHRQR 234

Query: 666 YLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGATAKPFITHHNEL 845
           YLDLI+N   R  F  R++II Y+R F D+  F+ VETP+MNM+ GGATAKPF+THHN+L
Sbjct: 235 YLDLIMNRSTRDRFVMRSRIIQYIRHFFDSRDFMEVETPMMNMIAGGATAKPFVTHHNDL 294

Query: 846 NMDLYMRIAPELYHKMLV 899
           +MDLYMRIAPELY KMLV
Sbjct: 295 DMDLYMRIAPELYLKMLV 312


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score =  144 bits (348), Expect = 2e-35
 Identities = 85/205 (41%), Positives = 121/205 (59%), Gaps = 5/205 (2%)
 Frame = +3

Query: 300 IEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAKLYETED- 476
           IEK++N      +  V  +V GR+ SIR SG+KL F+D+     K+QV+ N K   TE+ 
Sbjct: 67  IEKWRNKITKSEIAMVRYTVCGRISSIRYSGSKLAFFDVLYGNKKLQVVFNKKNIGTEEE 126

Query: 477 ---KFFKDTDKLRRGDIIGCVGHPGKTKKGELSIIPKNI-KLLAPCLHMLPHLHFGLKDK 644
              KF      L++GD I C G+ G++  GELSI    + KLL+PCLH +P     L + 
Sbjct: 127 MKGKFIPRLKALQKGDCIQCSGNVGRSGSGELSIYATELPKLLSPCLHPIP---VKLTNY 183

Query: 645 ETRFRKRYLDLILNDKVRQIFYTRAKIIAYVRRFLDNMGFLXVETPLMNMVPGGATAKPF 824
           E RF KR++D++ N K  ++   R +II  +R+F    GFL VETP+++   GGATA+PF
Sbjct: 184 EKRFEKRFVDMMSNTKSLELLEKRYRIIESIRKFFSERGFLEVETPILSHHFGGATARPF 243

Query: 825 ITHHNELNMDLYMRIAPELYHKMLV 899
           IT      + L +R APEL+ K LV
Sbjct: 244 ITSDIH-KLPLTLRCAPELWLKQLV 267


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 460 YMKQKISFLKILINYAEVISLVVWAIQVKLRKENFLLSRKI*NCLHHAFICCRIYISVSK 639
           Y   ++   + L++Y E  S  + A++V  R+  F L+ K   C+  A +C +    +SK
Sbjct: 494 YYSFRMLIYRPLLHYLEADSPAMQALKVPDRQTAFTLACK---CVDSAIVCVQNLSHLSK 550

Query: 640 TKKPALEKGIWT 675
             K  L++  WT
Sbjct: 551 GLKRTLDRYYWT 562


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 6/44 (13%)
 Frame = +3

Query: 135 PVVAAEKKPSKQEEE------ISPNEYYKLRSGAVAALKNGLKE 248
           P  A+  KPS+  EE      + PN++   R+G VAAL++ L++
Sbjct: 453 PTEASSTKPSEAAEESTPRFSVRPNKFTGSRAGFVAALESRLQK 496


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = +3

Query: 144 AAEKKPS-KQEEEISP-NEYYKLRSGAVAALKNGLK---EDHPYPHKFNVSISLEEFIEK 308
           A  K+P+ K  ++ S  ++Y  L SG +    +  +   E  PY +   V+ S+    + 
Sbjct: 448 AKNKQPATKLVQQASDFDQYVSLYSGYLQGFSDNFRPYVELLPYKNSRMVTHSIRFLEQS 507

Query: 309 YQNLNNGDVLENVTLSV 359
           Y N++NG V  N T  V
Sbjct: 508 YTNVSNGLVFVNTTTDV 524


>SPBC1734.03 ||SPBC337.19|dihydropteroatesynthase/2-amino-4-hydroxy-
           6-
           hydroxymethyldihydropteridinediphosphokinase/dihydroneop
           terinaldolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 20/78 (25%), Positives = 37/78 (47%)
 Frame = +3

Query: 279 SISLEEFIEKYQNLNNGDVLENVTLSVAGRVHSIRESGAKLIFYDLRAEGAKIQVMANAK 458
           S  L+E + KY++  N     +   ++  +   I+ + + L     + EG  I+V+  + 
Sbjct: 233 SYFLQESLHKYESTKNKIAYLSFGSNIGDKFEQIQTALSMLH----KIEG--IRVLDVSP 286

Query: 459 LYETEDKFFKDTDKLRRG 512
           LYETE  ++KD      G
Sbjct: 287 LYETEPMYYKDQPSFLNG 304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,535,371
Number of Sequences: 5004
Number of extensions: 71685
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)