Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E10
         (867 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    32   0.005
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    32   0.005
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    32   0.005
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    24   1.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 671 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 838
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 246 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 305


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 671 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 838
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 194 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 253


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 32.3 bits (70), Expect = 0.005
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
 Frame = +2

Query: 671 PCLQHAMPLYQKIIDQATVTANNSNGTI----SRGSIYCPEQLSVSSVIAAMTRLCEQHY 838
           P L  + P     I  ATVT  N + TI    SRGS++ P Q  ++       +  +QHY
Sbjct: 377 PHLNRSSPTTATAIASATVTIQNVSNTIPPFASRGSMHFPNQYQMNQEYRTDRKHTQQHY 436


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = +2

Query: 650 PIVSPHDPCLQHAMPLYQKIIDQATVTANNSNGTISRGSIYCPEQLSVSSVIAA 811
           P  SP+D  +  A  LY     Q +  ++NS    S+G+    +Q   +SV+AA
Sbjct: 63  PQDSPYDASVAAACKLYSSEGQQNSNYSSNSKPDCSKGN---ADQNGYASVVAA 113


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 197,654
Number of Sequences: 336
Number of extensions: 4278
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)