Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E10
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|...    31   0.16 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   0.28 
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    28   1.5  
SPBC16E9.17c |rem1||meiosis-specific cyclin Rem1|Schizosaccharom...    28   1.5  
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc...    28   2.0  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   8.0  

>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 565

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
 Frame = +2

Query: 317 NSFLDYLSVHAKLEYVALVSFSSVHDVAVPFT-RDFDSIR--TKLPQIEEGDKTCIDSAL 487
           N +L  LSV  +  + AL+S   +  + + +T  + D+I+  + + +  EG    ID   
Sbjct: 73  NLYLSQLSVTNQTLFYALISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHND 132

Query: 488 LGVNQLVMNEWGHQTPIQIILITDGSSGVGAIG 586
           L   +  ++E+G    ++ I+ITD S G+  IG
Sbjct: 133 LSYIKQQLSEFGKSDSVEYIIITD-SEGILGIG 164


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 20/56 (35%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
 Frame = -1

Query: 507 TS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*TDEND--TNATYSNLA 346
           +S +TPS+ ES  +L PSS+  S +L  S S+    ++S    +D  T++T+S+L+
Sbjct: 125 SSEYTPSSTESSSLLDPSSV-SSAILPSSTSVEVSISSSSLSSSDPLTSSTFSSLS 179


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -1

Query: 516 SFITS*FTPSNAESIHVLSPSSICGSLVLILSKSLVNGTATS*T-DENDTNATYSNLA 346
           S ITS  T S     H +SP S+ G+    LS  L N   +  T    D N T+ NLA
Sbjct: 366 SSITSLPTASFCPVKHGVSPPSLAGNQPSPLSSPLTNSNVSPSTICSPDNNVTFVNLA 423


>SPBC16E9.17c |rem1||meiosis-specific cyclin
           Rem1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -3

Query: 559 ISYQNNLYRCLVSPFIHHELIHS 491
           +SY + L +CL +PF HH  I+S
Sbjct: 350 VSYVHLLLKCLENPFDHHYAIYS 372


>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +2

Query: 428 IRTKLPQIEEGDK-TCIDSALLGVNQLVMNEWGH 526
           ++T     +E DK TC+D  +  ++Q++  +WG+
Sbjct: 421 VQTIFENCKEKDKRTCLDEIINNMDQIICGQWGN 454


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +2

Query: 605  SLPLPTLYPVKIHILPIVSPHDPCLQHAMPLYQKIID--QATVTANNSNGTIS 757
            SLP+ T Y   IHI P+          A+  ++ ++D  Q+ VT  +S+ T S
Sbjct: 1959 SLPIETAYYYSIHIRPVSEFKFNWTSEAIS-WKDLVDNKQSLVTCQHSDNTFS 2010


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,400,056
Number of Sequences: 5004
Number of extensions: 70497
Number of successful extensions: 196
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)