Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E10
         (867 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0067 - 17013606-17013614,17013912-17013998,17014126-170147...    29   3.6  
07_03_0151 - 14465479-14465675,14466280-14466401,14466934-144670...    29   4.8  

>03_04_0067 -
           17013606-17013614,17013912-17013998,17014126-17014746,
           17015037-17015174,17015891-17016013,17016127-17016204
          Length = 351

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
 Frame = +2

Query: 524 HQTPIQIILITDGSSGVGAIGRNRIIQSLPL--PTLYPVKIHILPIVSPH-DPCLQHAMP 694
           H    QI+LITDG  G+ A   +   +S PL   T   V ++  P V      CLQH+  
Sbjct: 235 HARDSQILLITDGDDGMDAGKCSNRAESAPLNDKTKSLVLVNYFPSVPVKVTACLQHSKS 294

Query: 695 L 697
           L
Sbjct: 295 L 295


>07_03_0151 -
           14465479-14465675,14466280-14466401,14466934-14467081,
           14467146-14467167,14467299-14467393,14467395-14467438,
           14467750-14467841,14467911-14467982,14468188-14468229,
           14468333-14468494,14468631-14468683,14468808-14468925,
           14468974-14469150,14469573-14469639,14470195-14470273,
           14473805-14473862,14474257-14474346,14474429-14474540,
           14474649-14474912,14475361-14475463,14476200-14476278,
           14476748-14476852
          Length = 766

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = +2

Query: 626 YPVKIHILPIVSPHDPCLQHAMPLYQKIIDQA 721
           +  ++ +LP+ +  +PC++HA+ L Q  ++ A
Sbjct: 125 FHTELELLPVTALENPCIKHAVELEQSFMEGA 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,379,587
Number of Sequences: 37544
Number of extensions: 394335
Number of successful extensions: 930
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2432722788
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)