Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E10
         (867 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical ...    30   1.9  
U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a prot...    28   9.9  

>AF038622-4|AAB94150.1|  337|Caenorhabditis elegans Hypothetical
           protein R07C12.1 protein.
          Length = 337

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = -1

Query: 480 ESIHVLSPSSICGSLVLILSK 418
           E+ + +SP S+CGS+V+ILSK
Sbjct: 123 ENFYDISPFSLCGSIVVILSK 143


>U53180-6|AAA96288.1|  202|Caenorhabditis elegans Hypothetical
           protein D1014.4 protein.
          Length = 202

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +2

Query: 233 VSLSMSRPVISSDSIENHTKSSIAVAAINSFLDYLSVHAKLEYVALVSFSSVHDVAVPFT 412
           VS +  +  +SS  +     +   V + NSF+   S    + Y  ++  SS++D++VP T
Sbjct: 140 VSKTFKKIPVSSQKMSRDIFNVCFVFSNNSFIQ--STRDAINYRQILVISSLNDISVPLT 197

Query: 413 RD 418
           +D
Sbjct: 198 QD 199


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = -1

Query: 480 ESIHVLSPSSICGSLVLILSK 418
           E  +  SP S+CGS+V+ILSK
Sbjct: 180 EKFYDNSPFSVCGSIVVILSK 200


>AC006714-11|AAN65282.3|  306|Caenorhabditis elegans F-box a protein
           protein 61 protein.
          Length = 306

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 260 ISSDSIENHTKSSIAVAAINSFLDYLSVHAKL--EYVALVSFSSVHDVAV-PFTRDFDSI 430
           +S  SI N T+   + + + SF+D+L    ++  + +ALV FS    +++ P   D +SI
Sbjct: 114 VSKLSIFNCTEDGCSCSTVPSFIDFLKSEERIYVKEIALVKFSFNAVISMFPHFNDLESI 173


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,760,622
Number of Sequences: 27780
Number of extensions: 392066
Number of successful extensions: 976
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2171433726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)