Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_E08
         (644 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RQI9 Cluster: DEAD/DEAH box helicase, putative; n=6; ...    33   5.9  
UniRef50_UPI0000D55C81 Cluster: PREDICTED: hypothetical protein;...    33   7.8  

>UniRef50_Q7RQI9 Cluster: DEAD/DEAH box helicase, putative; n=6;
            Plasmodium (Vinckeia)|Rep: DEAD/DEAH box helicase,
            putative - Plasmodium yoelii yoelii
          Length = 2237

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +3

Query: 57   YIKIRTIMSTNENNSEVAVDKVGDEN---KGDAKSELKG 164
            YIKIR      ENN++V  DK G      KG  K++LKG
Sbjct: 1028 YIKIRVKQLEEENNNDVEEDKTGKNKKNVKGKEKTKLKG 1066


>UniRef50_UPI0000D55C81 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 108

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 18/30 (60%), Positives = 23/30 (76%), Gaps = 1/30 (3%)
 Frame = +3

Query: 78  MSTNENNSEVAVDKV-GDENKGDAKSELKG 164
           MS+ ENN EVAV+K+  D++  DAK ELKG
Sbjct: 1   MSSKENN-EVAVEKIDNDKSAPDAKCELKG 29


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 345,572,763
Number of Sequences: 1657284
Number of extensions: 4611597
Number of successful extensions: 11514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11290
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11513
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48541014171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)