Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D23
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    30   0.42 
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    29   0.98 
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces...    27   2.3  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    27   3.0  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    26   6.9  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        26   6.9  
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy...    25   9.1  

>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 418 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEV 597
           +K+RLE E    ++    +    R    ++ + RKK   + E +    ++L+E +   E 
Sbjct: 104 EKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKEN 163

Query: 598 LQRRQKQ 618
            QRR KQ
Sbjct: 164 EQRRLKQ 170


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
 Frame = +1

Query: 418 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVV---KLVEYETD 588
           K RR + +E ED++   +KS N  + + ED+KN   +   +    N VV   KL++ +T 
Sbjct: 21  KNRRRQFQE-EDQLRRNNKSSNKLSQNEEDAKNMDSVVQKLNELQNNVVAFQKLLQEKTP 79

Query: 589 PEVLQ 603
              +Q
Sbjct: 80  LSSIQ 84


>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 472 KSMNSRTHSGEDSKNRK--KLKSDVENEGNLVVKLVEYETD 588
           K +NS   + E+S  ++    KSD E E ++  K  EY+ D
Sbjct: 87  KELNSSLENDEESSQQEDSSSKSDSEEESSMEPKTTEYDED 127


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 27/107 (25%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +1

Query: 391 LCETMASCYKKRRLEH-EESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVK 567
           +CET   C+  RR     +S   I  T+K+ N R HS   S     ++          + 
Sbjct: 1   MCETPIGCHTPRRCNRFIDSAALIDCTNKT-NQREHSPSFS-----IEIPTTPSRKRTLA 54

Query: 568 LVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPXTP 708
              ++T  + ++    ++   K  + Y N+  Q+  NK+ K LP TP
Sbjct: 55  SSHFQTPTKRIKYELGELQEEKTDL-YPNFPAQLKENKKPK-LPTTP 99


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = +1

Query: 427 RLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNL 558
           RL+H +S+    + D+  N+   S  + +N KK  S++EN GN+
Sbjct: 78  RLKHTQSD----LIDRFKNANLKSVNE-ENLKKFFSELENHGNI 116


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 442 ESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETDPEVLQRRQKQI 621
           +SE+ + V    ++ R  S +D    +    DVE   + + ++V    + E+L    ++ 
Sbjct: 675 KSEENVIVQLGKVSYRPDSTDDDVYIRGFSKDVERVVSEIKQVVRDAKNHEILHSHVEEF 734

Query: 622 D----YGKNTVG 645
           D    Y KN +G
Sbjct: 735 DFPAQYSKNVIG 746


>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +1

Query: 418 KKRRLEHEESED-KITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYETD 588
           KK + E + S   KI + +        + +  +  K    D E++  LVVK  E ET+
Sbjct: 172 KKHKAERKRSPSPKIEILEDDEEIEDVASDKDEEEKPWSGDEEDDDELVVKDSEDETE 229


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,796
Number of Sequences: 5004
Number of extensions: 53751
Number of successful extensions: 150
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)