Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D23
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0633 + 23840427-23840562,23840699-23840768,23840846-238409...    29   3.1  
06_01_1137 + 9412230-9412378,9412549-9412634,9413417-9413496,941...    29   5.4  
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683...    29   5.4  

>01_05_0633 +
           23840427-23840562,23840699-23840768,23840846-23840951,
           23841086-23841184,23841320-23841442,23841555-23842691
          Length = 556

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +1

Query: 529 KSDVENEGNLVVKLVEYETDPEVLQRRQKQIDYGKNTVGYQNYVQQIPLNKRTKELPXT- 705
           KS+V+ E N+    +   +    L +RQ  +  G N++G+ N VQQ   N+    LP T 
Sbjct: 377 KSNVQKE-NMAPNHLPSLSGFSNLDKRQSHVISGGNSIGHTNLVQQNSNNENV--LPSTQ 433

Query: 706 --PDKYLKYSRRSWDMLIK 756
             P K     R+   +L K
Sbjct: 434 LIPSKECNQGRKKLHLLSK 452


>06_01_1137 +
           9412230-9412378,9412549-9412634,9413417-9413496,
           9413826-9413881,9414038-9414086,9414692-9414841,
           9414993-9415088,9415442-9415555,9415655-9415785,
           9416171-9416408,9416603-9416656,9417100-9417117,
           9417906-9418722,9418797-9418846
          Length = 695

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +1

Query: 418 KKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVK 567
           KK+   H+ SE ++   D  ++ +     D +++KKL   VE E N + K
Sbjct: 314 KKKSSSHKSSEQQVETADSLLDKKDTITSDIESKKKL---VEEEKNKLAK 360


>06_01_0893 -
           6834350-6834464,6835042-6835218,6835301-6835350,
           6836348-6836416,6836495-6836593,6836681-6836759,
           6837604-6837704,6838645-6838713,6839548-6839588,
           6839793-6841159,6841472-6841575,6841914-6842351,
           6843040-6843567
          Length = 1078

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
 Frame = +1

Query: 403 MASCYKKRRLEHEESEDKITVTDKSMNSRTHSGEDSKNRKKLKSDVENEGNLVVKLVEYE 582
           +AS  + RRLE EE E+K     +  + R    E  K   +L+   E    L +++   E
Sbjct: 87  LASSVEVRRLEVEEEEEKARRESREESVRKREMEKEKQEAELE---EYHMQLALEMSARE 143

Query: 583 TDPEVLQ-RRQKQIDYG 630
            DPE  Q    KQI  G
Sbjct: 144 -DPEATQIEVAKQISLG 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,331,571
Number of Sequences: 37544
Number of extensions: 259228
Number of successful extensions: 612
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)