Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D23
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.34 
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    23   4.2  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.5  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.3  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   9.6  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    21   9.6  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   9.6  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   9.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +1

Query: 553 NLVVKLVEYETDPEVLQRRQKQIDYGKNT-VGYQNYVQQIPLNKRTKELPXTPDKYLKY 726
           N+   L  Y    E+ Q   + ID+ KNT + Y+N    I   KRT E       Y  Y
Sbjct: 399 NVKNTLDSYNGSMEINQNIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSY 457


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 147 ISEIKNNYTNNKYMGKLKFRPVH 215
           IS + NNY  N Y     ++P+H
Sbjct: 315 ISSLSNNYNYNNYNN--NYKPLH 335


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 NNYTNNKYMGKLKFRPVH 215
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 162 NNYTNNKYMGKLKFRPVH 215
           NNY NN Y  KL +  ++
Sbjct: 101 NNYNNNNYNKKLYYNIIN 118


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/31 (25%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 209 RAKFKFTHVFVVCVIIFYFAYIRYLI--LWF 123
           RAK +   + V+ + +F+  +  Y +  LW+
Sbjct: 253 RAKIRTLKMTVIIIAVFFICWTPYYVMSLWY 283


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +1

Query: 466 TDKSMNSRTHSGEDSKNRK 522
           T KS  SRT   E  KNR+
Sbjct: 43  TKKSQGSRTTHNELEKNRR 61


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 159 KNNYTNNKYMGKLKFR 206
           K NY NN Y  KL ++
Sbjct: 103 KYNYNNNNYNKKLYYK 118


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 685 SFCLVEFVEHNFDTQLCF 632
           SFC ++     FD Q CF
Sbjct: 143 SFCEIDVEYFPFDEQTCF 160


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 171 TNNKYMGKLKFRPVHCLPTNPDKISKY 251
           TNN Y   L  R ++ + T P   S+Y
Sbjct: 263 TNNLYYSPLSSRSLYYVNTKPFMKSEY 289


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,207
Number of Sequences: 438
Number of extensions: 3942
Number of successful extensions: 30
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)