Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D18
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q319S5 Cluster: Dolichyl-phosphate-mannose-protein mann...    33   9.3  
UniRef50_A4AUU9 Cluster: Putative uncharacterized protein; n=2; ...    33   9.3  

>UniRef50_Q319S5 Cluster: Dolichyl-phosphate-mannose-protein
           mannosyltransferase; n=2; Prochlorococcus marinus|Rep:
           Dolichyl-phosphate-mannose-protein mannosyltransferase -
           Prochlorococcus marinus (strain MIT 9312)
          Length = 515

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = +1

Query: 85  SNSFTHPFFXCLXL*IKNYFYFHVFINLSVVSIQVASKVVILLKYFVYYFNICVIV--GL 258
           +N FT+PF+  L     N F + +    S V +  AS+V I+ +YF++Y+ I ++V   L
Sbjct: 240 NNHFTNPFYYYLWNLSINIFPWTI---PSFVGLFKASRVNIISRYFLFYYPIFILVLLSL 296

Query: 259 LETK 270
             TK
Sbjct: 297 FSTK 300


>UniRef50_A4AUU9 Cluster: Putative uncharacterized protein; n=2;
           Flavobacteriales|Rep: Putative uncharacterized protein -
           Flavobacteriales bacterium HTCC2170
          Length = 229

 Score = 32.7 bits (71), Expect = 9.3
 Identities = 13/21 (61%), Positives = 18/21 (85%)
 Frame = +1

Query: 214 KYFVYYFNICVIVGLLETKVS 276
           KYF+Y+F I +IVGL+E+ VS
Sbjct: 27  KYFLYFFLIMIIVGLIESPVS 47


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,316,588
Number of Sequences: 1657284
Number of extensions: 9750885
Number of successful extensions: 18272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18270
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)