Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D18
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical ...    29   3.3  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z82076-3|CAB04939.1|  169|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>AF003136-3|AAO38651.1|  352|Caenorhabditis elegans Hypothetical
           protein F28B3.5b protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 130 IKNYFYFHVFINLSVVSIQVASKVVILLKYFVYYFNICVIVGLL 261
           +K   Y  + I LSV SI V  K+   LK F  +  IC  V +L
Sbjct: 141 VKALKYSQIAILLSVFSIAVTEKLSNSLKNFPIFQGICFFVAIL 184


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 130 IKNYFYFHVFINLSVVSIQVASKVVILLKYFVYYFNICVIVGLL 261
           +K   Y  + I LSV SI V  K+   LK F  +  IC  V +L
Sbjct: 141 VKALKYSQIAILLSVFSIAVTEKLSNSLKNFPIFQGICFFVAIL 184


>Z82076-3|CAB04939.1|  169|Caenorhabditis elegans Hypothetical
           protein W07G1.7 protein.
          Length = 169

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/44 (36%), Positives = 21/44 (47%)
 Frame = -1

Query: 171 TQIYKNMKVKIIFDLQXQTTKKWMSK*V*DCXKEEMATKVCECK 40
           TQIYKN K     D    + K+ + K + D   E+   K C CK
Sbjct: 103 TQIYKNEKSSKSIDRSVGSLKRVLVKEIGDFSFEKAEEKTCCCK 146


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,471,139
Number of Sequences: 27780
Number of extensions: 247859
Number of successful extensions: 437
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)