Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D17
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0030 - 19415263-19415388,19415649-19415728,19416196-194162...    29   1.8  
08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617     29   1.8  
12_02_0959 + 24818310-24818369,24818689-24819136,24819265-248194...    27   7.4  
12_02_1096 + 26050224-26051058,26051599-26051831,26051940-260522...    27   9.8  
12_02_0178 - 14941342-14941391,14941909-14942002,14942498-149427...    27   9.8  
08_01_0646 + 5592386-5592493,5592736-5592807,5592882-5593046,559...    27   9.8  

>11_06_0030 -
           19415263-19415388,19415649-19415728,19416196-19416232,
           19416338-19416460,19417195-19417242,19417335-19417378,
           19417461-19417506,19417581-19417623,19418329-19418422,
           19418503-19418604,19419936-19420014,19420698-19420964
          Length = 362

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 464 YLAANPLHVFVYVQYLSIGYILIHLPETFKNNI-KFVNSFLGC 339
           Y   + L +F Y+++L+ G  ++  PE  K+++ KF  S + C
Sbjct: 243 YQCLSKLRMFAYIKFLTSGTDMVRSPEVLKSSLFKFPVSKVSC 285


>08_02_0647 - 19687142-19687145,19687244-19689352,19689764-19690617
          Length = 988

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 315 SWKCPFCYITLFNLDRHLSYTR*PEFMPSYSSL 217
           SW  P C++ +F +  H  + R P +M S S L
Sbjct: 758 SWYPPPCHLEMFRMVSHFYFPRLPNWMSSLSEL 790


>12_02_0959 +
           24818310-24818369,24818689-24819136,24819265-24819482,
           24819651-24819929
          Length = 334

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +2

Query: 311 HDIAYTLAHNNREMN*QI*YYF*RFPANVLRCNQWINIVRRQRHEE 448
           HDI   L   NR+    + YY+         C++WI  +R  R  E
Sbjct: 258 HDIL--LIRPNRKQKWSVKYYYLSNTTRGFNCHRWIKFIRENRLRE 301


>12_02_1096 +
           26050224-26051058,26051599-26051831,26051940-26052230,
           26052860-26052988,26053082-26053255,26053334-26053547,
           26053881-26053968,26054195-26054239,26056969-26057015,
           26057441-26057727,26057812-26058051,26058141-26058257
          Length = 899

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 437 FVYVQYLSIGYILIHLPE 384
           +  +  +S+GY+L+HLPE
Sbjct: 635 YAKISIISVGYLLLHLPE 652


>12_02_0178 -
           14941342-14941391,14941909-14942002,14942498-14942716,
           14943409-14943492,14943783-14944067,14944349-14944501,
           14944618-14944740,14945429-14945495,14946122-14946309,
           14947134-14947250,14947720-14947812,14948377-14948459,
           14948565-14948610
          Length = 533

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +2

Query: 398 LRCNQWINIVR 430
           LRCNQW N+VR
Sbjct: 155 LRCNQWCNVVR 165


>08_01_0646 +
           5592386-5592493,5592736-5592807,5592882-5593046,
           5594218-5594454
          Length = 193

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 256 HSVTGVYAVVLEPFLINLS*YFGLLKQYKSKS 161
           HSV  V   V+EP  +N   Y G+L++ +S++
Sbjct: 71  HSVPLVTDAVVEPIYVNARQYHGILRRRQSRA 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,254
Number of Sequences: 37544
Number of extensions: 181960
Number of successful extensions: 343
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)