Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D17
         (545 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine rece...    33   0.13 
U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical pr...    30   0.95 
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    30   0.95 
U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine rec...    28   5.0  
Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical pr...    27   8.8  
AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin syntha...    27   8.8  
AF022982-1|AAB69937.1|  224|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U56963-3|AAP31428.1|  312|Caenorhabditis elegans Serpentine
           receptor, class v protein28 protein.
          Length = 312

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 488 FYFHLVHYYLAA---NPLHVFVYVQYLSIGYILIH 393
           FYFH   YY+AA   N ++ F+Y++   I ++ IH
Sbjct: 77  FYFHYQEYYIAAGTYNSIYYFLYIRCAGIVFLSIH 111


>U41263-8|AAC24430.1|  455|Caenorhabditis elegans Hypothetical
           protein T19D12.10 protein.
          Length = 455

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -1

Query: 383 TFKNNIKFVNSFLGCCELMCRQYHGNVLSVTLLFLILTDI 264
           TF +  +FV  FLG C ++C   HG   +++   + + D+
Sbjct: 10  TFNDKTRFVVLFLGICSIICN--HGAYTTISFTVICMQDV 47


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -1

Query: 452 NP-LHVFVYV-QYLSIGYILIHLPETFKNNIKFVNSFLGCC--ELMCRQYHGNVLSVTLL 285
           NP LH + Y+ Q+L     + H PE  + N K + SF      +L+ ++Y   +L  T L
Sbjct: 574 NPKLHAYYYIAQFLEPLETIFHFPEIAEQNRKVIESFFKQLFDKLLEQKYQEGLLQDTKL 633

Query: 284 FLILTD 267
            +  TD
Sbjct: 634 IIQKTD 639


>U56963-11|AAB38127.1|  342|Caenorhabditis elegans Serpentine
           receptor, class v protein32 protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -1

Query: 488 FYFHLVHYYLAA---NPLHVFVYVQYLSIGYI 402
           FYF   HYY+AA   N ++ F+Y++   I ++
Sbjct: 80  FYFEYQHYYVAAASYNNIYYFLYIRCTGIIFL 111


>Z72516-3|CAA96688.2| 1322|Caenorhabditis elegans Hypothetical
           protein T25G3.2 protein.
          Length = 1322

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 506 GQIILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIH 393
           G I+L F    +  +LAA  LH F +V  LSI  ++ +
Sbjct: 323 GIIVLHFVMRGISRFLAALDLHPFSFVHPLSIAPLIAY 360


>AY874871-1|AAX62732.1| 1322|Caenorhabditis elegans chitin synthase
           1 protein.
          Length = 1322

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -1

Query: 506 GQIILFFYFHLVHYYLAANPLHVFVYVQYLSIGYILIH 393
           G I+L F    +  +LAA  LH F +V  LSI  ++ +
Sbjct: 323 GIIVLHFVMRGISRFLAALDLHPFSFVHPLSIAPLIAY 360


>AF022982-1|AAB69937.1|  224|Caenorhabditis elegans Hypothetical
           protein T23B12.5 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 500 IILFFYFHLVHYYLAANPLHVFVYVQ 423
           I L + FH+ ++YL +NP H  +  Q
Sbjct: 189 IFLIYAFHMSNFYLFSNPSHRILICQ 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,859,840
Number of Sequences: 27780
Number of extensions: 179267
Number of successful extensions: 443
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)