Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D17
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               27   0.16 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    27   0.16 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   0.88 
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    24   1.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   3.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   3.5  

>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
 Frame = -1

Query: 500 IILFFYFHLVHYYLAANPLHVFVYVQYLS---IGYILIHLPETFKNNIK 363
           +++F Y   V   + AN ++  + +  +S   I Y +IH+  TFK+ IK
Sbjct: 5   LVIFVYILSVAVIIRANGINEILKIMAVSMKDIRYCIIHMGLTFKDFIK 53


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 26.6 bits (56), Expect = 0.16
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -1

Query: 371 NIKFVNSFLGCCELMCRQYHGNVLSVT--LLFLILTDISLTL 252
           +I FV SF GCC  + R+ H   ++    LLF++L  I++ +
Sbjct: 60  SIIFVISFFGCCGAI-RESHCMTITFASFLLFILLVQIAVAV 100


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 0.88
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 434 VYVQYLSIGYILIHLPETFKNNIKFV 357
           V V  L  GY+LIH+     NNI  +
Sbjct: 58  VLVILLRAGYVLIHIGSVPVNNINLI 83


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 329 MCRQYHGNVLSVTLLFLILTDISLTLGD 246
           +C +++GN+ +V   +L+L   S+ +GD
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGD 152


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +1

Query: 208 LLKKARVRRHKLRSPSVREMSVK 276
           LL++A++RR++ R+P   + + K
Sbjct: 170 LLRRAQIRRNERRTPDPHDETAK 192


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 17  HWSRCLCFLV 46
           HWS CL FLV
Sbjct: 291 HWSGCLQFLV 300


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +2

Query: 17  HWSRCLCFLV 46
           HWS CL FLV
Sbjct: 259 HWSGCLQFLV 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,848
Number of Sequences: 438
Number of extensions: 2271
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)