Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D15
         (446 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    38   5e-04
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.3  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   7.0  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   7.0  
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch...    25   7.0  
SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1 |Schizo...    24   9.3  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    24   9.3  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    24   9.3  

>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 38.3 bits (85), Expect = 5e-04
 Identities = 18/37 (48%), Positives = 24/37 (64%)
 Frame = +3

Query: 15  DXPQFSELVLQAETAIDNGIFPERIYQGSSGSYFVKN 125
           D   +  L+   + AI +G+FP  I +GSSGSYFVKN
Sbjct: 127 DYKDYVRLLDATKEAIAHGVFPVLISKGSSGSYFVKN 163


>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 5.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -2

Query: 151 IYKSLTPPAFFTKYDPLDPW 92
           + +   P A FT Y PL PW
Sbjct: 330 LMEDCAPDANFTLYTPLQPW 349


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 36  LVLQAETAIDNGIFPERIYQG 98
           L+ QAE  ID GI P RI  G
Sbjct: 118 LLEQAEALIDKGIHPIRIADG 138


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 213 LLWFYCQRLLYFYNHRLRQDYNIDK 287
           +LW Y + LL F +HR +++  I K
Sbjct: 55  VLWMYKKDLLGFTSHRKKRENKIKK 79


>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 7.0
 Identities = 15/33 (45%), Positives = 15/33 (45%)
 Frame = -3

Query: 174 STTRGPQVFINPSPRPRFLRSTTRWILGISSPG 76
           ST  GPQ F N    P F     R I GI  PG
Sbjct: 475 STYGGPQTFPNSGNNPNF----NRGIAGIVPPG 503


>SPCC126.10 |iah1||isoamyl acetate hydrolytic enzyme Iah1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 246

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +3

Query: 225 YCQRLLYFYNHRLRQD 272
           YC  L+ FY  RLR D
Sbjct: 57  YCAELMNFYQRRLRVD 72


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +1

Query: 4   RFSVMXPSSASWYYRRRRPLITASSRRGYTKDPAG 108
           R+    P    W+  +   L T   R GY K+P G
Sbjct: 709 RYMFFNPEDVIWF--KPIQLFTKQGRTGYIKEPLG 741


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 9.3
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
 Frame = +1

Query: 166 GSRNSTIINCNY---KFA---HCYGSIVKDYCTSI-ITDFAKTTI*INDIKDKQY*SILN 324
           G +NS I +CNY   KF      Y    K+ C S+ + D+         +  + Y  ++N
Sbjct: 309 GIKNSEIASCNYEARKFGIKNGMYVGTAKNLCPSLRVVDYDFGA--YESVSREFYTILVN 366

Query: 325 LTTDYKKSLSIN 360
              DY K +SI+
Sbjct: 367 TLHDYIKVISID 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,519,965
Number of Sequences: 5004
Number of extensions: 29718
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 164204010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)