Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_D13
(794 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 335 6e-91
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 302 7e-81
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 241 1e-62
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 230 4e-59
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 194 2e-48
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 144 2e-33
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 99 1e-19
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 96 1e-18
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 95 1e-18
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 94 3e-18
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 91 4e-17
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 86 8e-16
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 86 1e-15
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 83 8e-15
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 82 1e-14
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 82 2e-14
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 81 3e-14
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 78 3e-13
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 77 5e-13
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 77 7e-13
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 65 2e-09
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 63 9e-09
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 60 6e-08
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 59 1e-07
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 40 0.072
UniRef50_Q69NC6 Cluster: Putative uncharacterized protein OJ1742... 35 2.0
UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1; ... 34 3.6
UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to ENSANGP000... 33 6.2
UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4; ... 33 6.2
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 33 8.3
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 335 bits (824), Expect = 6e-91
Identities = 148/237 (62%), Positives = 176/237 (74%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F P HGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE DRPGS
Sbjct: 6 FSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDRPGS 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
K+NKKE+VEAVTI+ETPPMV VG+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+
Sbjct: 66 KVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKS 125
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQL 567
WQDE G+K +EKDF M +YC V+RVIAH AH+MEIQ+
Sbjct: 126 KKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQV 185
Query: 568 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
NGGT+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHTKKLPR
Sbjct: 186 NGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPR 242
Score = 43.2 bits (97), Expect = 0.008
Identities = 16/23 (69%), Positives = 19/23 (82%)
Frame = +2
Query: 725 RSYPVKTHKGLXKVACIGAWHPS 793
+ P KTH+GL KVACIGAWHP+
Sbjct: 238 KKLPRKTHRGLRKVACIGAWHPA 260
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 302 bits (741), Expect = 7e-81
Identities = 135/237 (56%), Positives = 166/237 (70%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F P HG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE RPG
Sbjct: 6 FSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGL 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
KI+K+E VEAVTI+ETPP+V VGVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+
Sbjct: 66 KISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKS 125
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQL 567
W+D G+K ++KDF M +YC V+RVI H AHIMEIQL
Sbjct: 126 KKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQL 185
Query: 568 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
NGGT+ +KV WA+ LEK +PV SVF+Q E+ID I SRWHTKKLPR
Sbjct: 186 NGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPR 242
Score = 44.4 bits (100), Expect = 0.003
Identities = 17/23 (73%), Positives = 19/23 (82%)
Frame = +2
Query: 725 RSYPVKTHKGLXKVACIGAWHPS 793
+ P KTHKGL KVACIGAWHP+
Sbjct: 238 KKLPRKTHKGLRKVACIGAWHPA 260
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 241 bits (591), Expect = 1e-62
Identities = 104/160 (65%), Positives = 124/160 (77%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F P HG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D+PGS
Sbjct: 6 FSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDKPGS 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
K+NKKE+VEAVTI+ETPPMV GV GY++TP G RAL T+WAEH+SE+ RRRFY NW
Sbjct: 66 KVNKKEVVEAVTIVETPPMVIAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKS 125
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAH 507
WQDE G+K IE DF K+ +YCS +RVIAH
Sbjct: 126 KKKAFTKYAKKWQDEDGKKLIEADFAKLKKYCSSIRVIAH 165
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/23 (78%), Positives = 19/23 (82%)
Frame = +2
Query: 725 RSYPVKTHKGLXKVACIGAWHPS 793
+ P KTHKGL KVACIGAWHPS
Sbjct: 190 KKLPRKTHKGLRKVACIGAWHPS 212
Score = 34.7 bits (76), Expect = 2.7
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +1
Query: 640 VFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
V A +MID I SRWHTKKLPR
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPR 194
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 230 bits (562), Expect = 4e-59
Identities = 110/240 (45%), Positives = 144/240 (60%), Gaps = 3/240 (1%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F+HP HG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ DRPGS
Sbjct: 57 FEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDRPGS 116
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
K+NKKE+VE VTI+E PPMV VG+VGY +TP G + + TVWA H S + RRRFYKNW
Sbjct: 117 KVNKKEVVEPVTILEAPPMVVVGIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQS 176
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHX---XXXXXXXXXXXAHIME 558
+ GR + + K + ++RV+AH AH+ E
Sbjct: 177 AQLAFTKRKQFARTTEGRLAEARTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSE 236
Query: 559 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
IQ+NGGTI K++ A+ LEK + +DSVF Q E D RW LPR
Sbjct: 237 IQINGGTIAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPR 296
Score = 44.0 bits (99), Expect = 0.004
Identities = 17/20 (85%), Positives = 18/20 (90%)
Frame = +2
Query: 734 PVKTHKGLXKVACIGAWHPS 793
P KTH+GL KVACIGAWHPS
Sbjct: 295 PRKTHRGLRKVACIGAWHPS 314
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 194 bits (473), Expect = 2e-48
Identities = 89/183 (48%), Positives = 119/183 (65%)
Frame = +1
Query: 25 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 204
NF P HGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ DRP
Sbjct: 5 NFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDRPE 64
Query: 205 SKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYX 384
SK+NKKE+VE V I+ETPPMV +G+VGYIE P GL V+AEH+S ++ FYKNW+
Sbjct: 65 SKMNKKEVVEGVAIVETPPMVVMGIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHS 124
Query: 385 XXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQ 564
++G++ +E +FK M +YC V+ ++AH AH+MEIQ
Sbjct: 125 EKKASTKYF------DMGKRQLEMEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHLMEIQ 178
Query: 565 LNG 573
+ G
Sbjct: 179 VMG 181
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 144 bits (349), Expect = 2e-33
Identities = 87/236 (36%), Positives = 125/236 (52%)
Frame = +1
Query: 70 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTII 249
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ DRPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 250 ETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQD 429
ET P + VG VG ET GL+ +V+A+H+S +C+R K Y W+
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIK--YKTNTSPNTKARSSWR- 117
Query: 430 ELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNGGTIEDKVKWARE 609
G ++ + ++ C AH+ E Q+N G + K+ WA +
Sbjct: 118 --GTSALTQ--MCLLPLCQ-----------------KKAHLTESQVNRGPVA-KLDWAHK 155
Query: 610 HLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR*DTQGSXESCLHW 777
LE+ +PV+ +F + I S W+TKK+P Q E+ W
Sbjct: 156 KLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAACIW 210
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 98.7 bits (235), Expect = 1e-19
Identities = 78/238 (32%), Positives = 113/238 (47%), Gaps = 4/238 (1%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV DRPG +
Sbjct: 9 PRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRPGRPTS 67
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPH-GLRALLTVWAEHMSE-DCRRRFYKNWYXXX 390
KEI VTI+ETPPM V Y P+ G +L WA+ E + +RR
Sbjct: 68 GKEIFVPVTIVETPPMFVAAVRLYGYDPNRGRYSLGEAWAQPPPELELQRRI-------- 119
Query: 391 XXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXX-XXXXXXXXXXAHIMEIQL 567
+ + KS+E+ K VR+IA ++EI++
Sbjct: 120 -----STLGSFDTDKMLKSLEERLDK----AEDVRLIAASQPKLAGGLSKKKPDLLEIKV 170
Query: 568 NGGTIEDKV-KWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
G + K+ +A++ L I V+ VF + +++D I RW K+LPR
Sbjct: 171 GGVSDVTKLFDYAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPR 228
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 95.9 bits (228), Expect = 1e-18
Identities = 63/219 (28%), Positives = 101/219 (46%), Gaps = 7/219 (3%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMS--EDCRRRFYKNWYXXX 390
+EI +AVT++E PPM + V GY TP+G++ +WA+ S + RF
Sbjct: 66 GQEIRKAVTVVEVPPMKVLAVRGYHMTPYGMQTAGEIWADSSSGPDGLMPRFANQTRGDR 125
Query: 391 XXXXXX--XXXXWQDELGRKSIEKDFKKMI---RYCSVVRVIAHXXXXXXXXXXXXAHIM 555
+ + + D + C V ++A IM
Sbjct: 126 DIEEGRKPAKRAGRIPVREGGMNGDALAALTDSNLCEVRLIVATQPALVKSVPSKTPVIM 185
Query: 556 EIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCI 672
E+ L GG K++WA E L I +D V+ + +D +
Sbjct: 186 EVGLVGGDTGAKLEWAHERLGGEIGIDDVYEAGKELDVV 224
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 95.5 bits (227), Expect = 1e-18
Identities = 67/236 (28%), Positives = 112/236 (47%), Gaps = 2/236 (0%)
Frame = +1
Query: 25 NFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPG 204
N P GS+ F P+KR++R +++++P++D V L AF YKAGM+H + D P
Sbjct: 4 NINRPRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPK 60
Query: 205 SKINKKEIVEAVTIIETPPM-VC-VGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNW 378
S +E+ +TI+E PP+ VC + V G E + L L VWA+++ ++ R+
Sbjct: 61 SPNAGQEVFTPITILEAPPINVCAIRVYGRNERNY-LTTLTEVWADNLDKELERKI---- 115
Query: 379 YXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIME 558
+ RK++E D + + VRV+ H I+E
Sbjct: 116 -------------KLPKKEDRKTVE-DLEALKDKIEDVRVLVHTNPKLTCLPKKKPEILE 161
Query: 559 IQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK 726
I++ G IE+++ +A+E L K + + VF + E++D I RW K
Sbjct: 162 IRIGGKDIEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVK 217
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 94.3 bits (224), Expect = 3e-18
Identities = 65/212 (30%), Positives = 95/212 (44%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 396
E+ +AVT++E PPM + V GY TP+G + WA S D +
Sbjct: 66 GAEVRKAVTVVEVPPMRVLAVRGYKMTPYGKQTAGEAWA---SADKLSDVIPSLPRRIPE 122
Query: 397 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNGG 576
D+L + V +++ IME+ L GG
Sbjct: 123 RKEHDANAHLDKLRESDL----------AEVRLIVSSQPDKVSAVGSKSPEIMEMGLTGG 172
Query: 577 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCI 672
+ ++ WA E L + + ++ VF ID I
Sbjct: 173 DLGAQLDWAAEKLGEELGIEDVFESGSDIDVI 204
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 90.6 bits (215), Expect = 4e-17
Identities = 52/135 (38%), Positives = 71/135 (52%)
Frame = -3
Query: 726 LCVPTRSDTFVSFALGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFVLDGTTVKLDFHNV 547
L P+ DT + GD+N +NHFIL ++R++R+ F ++F GP +FV DGTTV LDF V
Sbjct: 39 LGTPSVGDTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQV 98
Query: 546 SXXXXXXXXXXXXVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFV 367
S V DS N +V + F F + F F E LL F+PV V
Sbjct: 99 SFLLRQWSLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLV 156
Query: 366 EATSTVFRHMLRPDS 322
E++S F + PDS
Sbjct: 157 ESSSDFFTQVFSPDS 171
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 86.2 bits (204), Expect = 8e-16
Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 9/248 (3%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ D PG N
Sbjct: 7 PRRGSLGFSPRKRAKSIVPRIRSWPKETE---VRMLGFAGYKAGMTHILMIDDEPG-LTN 62
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED---CRRRFYK----- 372
KEI VTIIETPP+ G+ Y GL V D + R K
Sbjct: 63 GKEIFMPVTIIETPPLRVFGIRAYRMGYLGLETATEVIVPDFPLDNYPAKERKGKPKPKM 122
Query: 373 NWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXX-XXXXXXXXAH 549
+Y + E+ + + + + MI+ +V V A
Sbjct: 123 TFYKLLERRIATLPKNYTQEMFEQKLGQ-LEDMIKEGEIVDVRAIVATQPWVIKLKKKPE 181
Query: 550 IMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 729
+ME + G ++E+K + +E L K + V V + E++D I RW K
Sbjct: 182 VMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKL 241
Query: 730 LPR*DTQG 753
D++G
Sbjct: 242 RAHKDSKG 249
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 85.8 bits (203), Expect = 1e-15
Identities = 45/108 (41%), Positives = 58/108 (53%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV D+ +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRR 360
E VT++ETPPM V Y +TP+G + L VWA+ E R
Sbjct: 65 GMETTVPVTVVETPPMRAAAVRLYEDTPYGKKPLTEVWADDTHESLDR 112
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 83.0 bits (196), Expect = 8e-15
Identities = 71/278 (25%), Positives = 119/278 (42%), Gaps = 41/278 (14%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLTAFI 153
+ P HGS+G P+KR+ + +++++P K KPV L ++
Sbjct: 6 YSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LLGYV 64
Query: 154 GYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGY-IETPHGLRALLTVW 330
YKAGM+H + DRP + + KEI VT+++ PP++ +G+ GY I HGL + VW
Sbjct: 65 AYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGLRGYKIHPMHGLLSFGEVW 124
Query: 331 ---AEHMSEDCRRRFYKNWYXXXXXXXXXXXXXW--------------QDELGRKSIEKD 459
E + E + + N + E G K +E +
Sbjct: 125 RSPVEALKELYEKIYSDNPFINLGAKDIVRKYLKGLRKVNPGLVKPEPHSEYGFKFLENN 184
Query: 460 FKKMIRYCSV-----VRVIAHXXXXXXXXXXXXAHIMEIQLNGGTIEDKVKWAREHLEKP 624
+K+ + +RVIA I+EI++ GGT+ +++ +A + L
Sbjct: 185 WKEKLERLKAAELADIRVIASTIPVLSGIGKKKPEIIEIKIGGGTLSERIDYAEKLLGNY 244
Query: 625 IPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
+ VD VF + + ID I R+ K+LPR
Sbjct: 245 VTVDQVFREGQFIDIIGVTKGKGFQGVIKRFGVKELPR 282
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 82.2 bits (194), Expect = 1e-14
Identities = 63/234 (26%), Positives = 100/234 (42%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 396
+E A T+IE PP+ V V Y +TP+G + L VWA+ + +D R F
Sbjct: 63 GQERFYAATVIEVPPLKVVAVRVYEKTPYGKKTLCEVWAKDLPKDLERVF---------- 112
Query: 397 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNGG 576
+D+ + K +++ S VRV+A ++EI + GG
Sbjct: 113 ------PLPKDQSYHEEQLKKLEEVKSRVSEVRVLAATQPRLSGLGKKKPELIEIAV-GG 165
Query: 577 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
E + A E L K + + VF + + ID I R+ +++PR
Sbjct: 166 PPEKALSLALEKLGKDLTISDVFKEGDYIDVIAVTKGKGFQGSVKRFGVEEMPR 219
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 81.8 bits (193), Expect = 2e-14
Identities = 59/227 (25%), Positives = 94/227 (41%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + D P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXX 396
+EI VTI++ PPM + Y TP G R + WAE E R +
Sbjct: 69 GEEISVPVTILDAPPMYVAAIRAYAPTPDGYRCVTEAWAEIPEELEMDRVF-----TVPK 123
Query: 397 XXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNGG 576
+EL + I ++ +RVI +ME ++ G
Sbjct: 124 DGEAGDLDKIEELVDEGIVEE----------IRVIVATQPKKAGVPKKKPDVMEYRIGGK 173
Query: 577 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 717
+ ++ ++A E L + I VF + E++D RW
Sbjct: 174 DVRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRW 220
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 81.0 bits (191), Expect = 3e-14
Identities = 65/245 (26%), Positives = 111/245 (45%), Gaps = 11/245 (4%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ DR
Sbjct: 9 PRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDREHVDTA 65
Query: 217 KKEIVEAVTIIETPPMVCVG--VVGYIETPHGLRALLTVW-------AEHMSEDCRRRFY 369
+EI VT+IETPPMV +G V GY + G AL VW E + E+ R++
Sbjct: 66 GQEIFVPVTVIETPPMVVLGARVYGY-DPNRGRYALTEVWRNPSDTIKEKLGEEVLRKYL 124
Query: 370 KNWYXX--XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXX 543
++ ++ K ++ D +K++ V +++
Sbjct: 125 LGMSKRLPHMVEELGPGKGFEFKVPEKELDVDPEKVV---GVGLIMSSIPFLAGGVSKKA 181
Query: 544 AHIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHT 723
I+E+++ G +E +++A+ L + + V+ V + +D I R+
Sbjct: 182 PDILEVKVGGSPVE-ALEYAKGKLGQLVDVEEVIEAGKFVDVIGVTKGKGFQGVIKRFGV 240
Query: 724 KKLPR 738
K+LP+
Sbjct: 241 KELPK 245
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 77.8 bits (183), Expect = 3e-13
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 1/232 (0%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS+ + P+ R++ +++A+PK D +P + A G+KAG +V DR
Sbjct: 9 PRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDREKVPNA 67
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF-YKNWYXXXX 393
K++V T++ TPP++ +G+ GY + GL A V+AE + + + KN
Sbjct: 68 GKQLVSLGTVLVTPPVLILGIRGYSKDHDGLHAEFDVYAEDIPKSIAKEISLKN------ 121
Query: 394 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNG 573
+ E + EK KK+ ++V + +I E ++G
Sbjct: 122 ----------KQENALDNAEKSLKKIKEIFAIVAI----SPSAAGLEQKKPYIFEASVSG 167
Query: 574 GTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKK 729
G I + +E L K I +D +F +D RW+ KK
Sbjct: 168 GDIPKQFAHVKELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKK 219
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 77.0 bits (181), Expect = 5e-13
Identities = 59/237 (24%), Positives = 96/237 (40%), Gaps = 3/237 (1%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GS G P+KRS + +P+ + P L F+GYK GMTHV D P S N
Sbjct: 9 PRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDWPNSPTN 67
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLT-VWAEHMSE--DCRRRFYKNWYXX 387
KEI VT++E PP++ + + Y G ++T W+ + D RR +
Sbjct: 68 GKEIYMPVTVLEVPPIIPLALRAYAIDGKGEPNVITEYWSSSSLQFLDITRRI----HSI 123
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQL 567
DE ++ + R +++ ++EIQ+
Sbjct: 124 SSFLKDDESKKKFDERFNTKLDLIKSNLDRIVYFRLLVSTQPRKIPSLGKKAPDLVEIQI 183
Query: 568 NGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
GG + ++ +A L K I + VF + ++ID + R+ +LPR
Sbjct: 184 GGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVIKRYSVVELPR 240
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 76.6 bits (180), Expect = 7e-13
Identities = 59/231 (25%), Positives = 99/231 (42%), Gaps = 4/231 (1%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPDRPGSK 210
P GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V DRP S
Sbjct: 7 PRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHSA 62
Query: 211 INKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSE-DCRRRFYKNWYXX 387
EI VTI+E P M G+ Y ++P+G + + W + + KN Y
Sbjct: 63 TEGMEISVPVTIVEAPQMHVAGIRVYDDSPYGKKVIGEAWISDLKMLESLTHLPKNGYKT 122
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKM-IRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQ 564
EL +K + D + M + S V I +ME +
Sbjct: 123 DEQLAKIA------ELVKKGVVADLRVMTVTLTSEVSGIP----------KKVPELMENR 166
Query: 565 LNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRW 717
+ GG + + ++A+ + K + + VFA E++D RW
Sbjct: 167 IAGGDMAKRFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRW 217
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 64.9 bits (151), Expect = 2e-09
Identities = 54/236 (22%), Positives = 96/236 (40%), Gaps = 1/236 (0%)
Frame = +1
Query: 34 HPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKI 213
H GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 6 HSRRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVT 63
Query: 214 NKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXX 393
+ I VT+IE PP+ +G+ Y E G ++ Y+ W
Sbjct: 64 AGQPIFVPVTVIEVPPLDVIGIRLYDEDEEGNMVVV---------------YEKWTQNLD 108
Query: 394 XXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQLNG 573
++ E+ K + + Y V ++A I E+++ G
Sbjct: 109 KELFKKITTFK-EVKEKPVPE------TYADVRLIVATRNKDVPGIPSKKPEIFELRIGG 161
Query: 574 G-TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
G +++++ ++A HL K I + + +D + R+ K LPR
Sbjct: 162 GNSVKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPR 217
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 62.9 bits (146), Expect = 9e-09
Identities = 34/112 (30%), Positives = 59/112 (52%)
Frame = +1
Query: 37 PXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKIN 216
P GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + IN
Sbjct: 9 PRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNIN 58
Query: 217 KKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYK 372
+ + VT++E P ++ +G Y + L+ + +++ + + R+ K
Sbjct: 59 GERVFTPVTVLEAPELLVIGAKAYKKENGALKEISSLYFNDLPQYVFRKIPK 110
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 60.1 bits (139), Expect = 6e-08
Identities = 34/100 (34%), Positives = 52/100 (52%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F+HP GS+GF PKKRS R K + + +++ F K THV+R + S
Sbjct: 6 FEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNIVSS 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTV 327
K + I++ VT++E PP+ VG+ Y + L L T+
Sbjct: 66 KSYQNPIIDEVTLMECPPIEVVGLCAYALSSGHLVKLKTI 105
Score = 37.9 bits (84), Expect = 0.29
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +2
Query: 734 PVKTHKGLXKVACIGAWHPS 793
P KTH+GL KVACIG W PS
Sbjct: 223 PRKTHRGLRKVACIGPWTPS 242
Score = 34.3 bits (75), Expect = 3.6
Identities = 17/64 (26%), Positives = 33/64 (51%)
Frame = +1
Query: 547 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTK 726
+ E + GG+ + K+++ + K I ++S+F ++++ID I SRW
Sbjct: 161 YFFETDIIGGSPKMKLEFWLKLNNKKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGIT 220
Query: 727 KLPR 738
+LPR
Sbjct: 221 RLPR 224
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 58.8 bits (136), Expect = 1e-07
Identities = 31/108 (28%), Positives = 56/108 (51%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F P GS+ + P+ R+R +++ +P+ +P L A G+KAG +V DR +
Sbjct: 6 FSQPRRGSLAYSPRGRARSMEARIRGWPERQ-GEP-RLLAHAGFKAGCIQIVSIDDREHT 63
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSED 351
K++V T++ TPP+ +G+ GY + +G V+AE + +
Sbjct: 64 PNAGKQLVSLGTVLVTPPLHVLGMRGYSKGHYGRHVKFDVFAEDLPRE 111
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.9 bits (89), Expect = 0.072
Identities = 20/46 (43%), Positives = 27/46 (58%)
Frame = +1
Query: 85 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGSKINKK 222
HR + K FPK+D K HL F+ +A MT+ V E +R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q69NC6 Cluster: Putative uncharacterized protein
OJ1742_G01.32; n=1; Oryza sativa (japonica
cultivar-group)|Rep: Putative uncharacterized protein
OJ1742_G01.32 - Oryza sativa subsp. japonica (Rice)
Length = 100
Score = 35.1 bits (77), Expect = 2.0
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 219 ERDRGGCHHHRDSSDGLCRCCWIH*DPSWT 308
E DRG CHH+ S GLCR C + P+ T
Sbjct: 36 EGDRGCCHHYLTGSPGLCRRCPLRAHPAAT 65
>UniRef50_Q54JS8 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 1205
Score = 34.3 bits (75), Expect = 3.6
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +1
Query: 70 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH--VVREPDRPGSKINKKEIVEAVT 243
K +++ K+K +++ K + AFI A ++ +R DR ++N I + T
Sbjct: 19 KANKKKAAKLKKLEQNEALKGRNPKAFISQAAYASNRLTIRNLDREAKRVNLPVIDRSGT 78
Query: 244 IIETPPMVCVGVVG 285
+ETPP V + VVG
Sbjct: 79 AVETPPYV-IAVVG 91
>UniRef50_UPI00015B6051 Cluster: PREDICTED: similar to
ENSANGP00000006197; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to ENSANGP00000006197 - Nasonia
vitripennis
Length = 1307
Score = 33.5 bits (73), Expect = 6.2
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = -2
Query: 397 PSSCICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHRHKPSEESR 248
PS+ I T SD++ L P QS V+ +GS+ HR K SEE R
Sbjct: 840 PSASINTKKYESDIEILSN---PSQSSIEVLDDGSKSTTPHRKKSSEERR 886
>UniRef50_Q9MAP1 Cluster: Putative F-box protein At1g33020; n=4;
Arabidopsis thaliana|Rep: Putative F-box protein
At1g33020 - Arabidopsis thaliana (Mouse-ear cress)
Length = 518
Score = 33.5 bits (73), Expect = 6.2
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -1
Query: 638 ESTGIGFSRCSLAHFTLSSMVPPLSWISIM*AFFCRCFNSFI 513
E TG+ S+C +H +S + PL W+SI+ F + SF+
Sbjct: 474 EFTGVKTSKCDTSHLQVSCELSPLCWLSIL-LFLVMVYMSFM 514
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 33.1 bits (72), Expect = 8.3
Identities = 18/50 (36%), Positives = 27/50 (54%)
Frame = -3
Query: 264 HRRSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVV 115
HRR + ++ D+ LVD T++ VG GLITD +S ++ A V
Sbjct: 475 HRRDVTAARAIADMILVDERDATMQVQAEVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 816,852,637
Number of Sequences: 1657284
Number of extensions: 16591585
Number of successful extensions: 38387
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38359
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67908372675
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -