Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_D13
(794 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 281 3e-76
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 279 2e-75
11_01_0710 - 5830475-5830595,5831498-5834124 32 0.60
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847... 30 2.4
04_04_1477 + 33873976-33874080,33874433-33874544,33874777-338748... 29 3.2
05_04_0324 - 20273797-20274261 29 4.3
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 281 bits (690), Expect = 3e-76
Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 1/238 (0%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F+HP HGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPLVIVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAH-XXXXXXXXXXXXAHIMEIQ 564
+ + G+K I+ +KM +Y S+VRVIAH AH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQ 185
Query: 565 LNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
+NGGTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 734 PVKTHKGLXKVACIGAWHPS 793
P KTH+GL KVACIGAWHP+
Sbjct: 242 PRKTHRGLRKVACIGAWHPA 261
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 279 bits (683), Expect = 2e-75
Identities = 129/238 (54%), Positives = 164/238 (68%), Gaps = 1/238 (0%)
Frame = +1
Query: 28 FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
F+HP HGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE ++PGS
Sbjct: 6 FEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEKPGS 65
Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
K++KKE EAVTIIETPP+V VG+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW
Sbjct: 66 KLHKKETCEAVTIIETPPIVVVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKS 125
Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAH-XXXXXXXXXXXXAHIMEIQ 564
+ + G+K I+ +KM +Y SVVRVI H AH+MEIQ
Sbjct: 126 KKKAFTKYALKYDSDAGKKEIQMQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQ 185
Query: 565 LNGGTIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
+NGGTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 186 INGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Score = 42.7 bits (96), Expect = 3e-04
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2
Query: 734 PVKTHKGLXKVACIGAWHPS 793
P KTH+GL KVACIGAWHP+
Sbjct: 242 PRKTHRGLRKVACIGAWHPA 261
>11_01_0710 - 5830475-5830595,5831498-5834124
Length = 915
Score = 31.9 bits (69), Expect = 0.60
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 668 QSIISSWANTESTGIGFSRCSLAHFTLSSMVPPLSWISIM 549
+S+ISSW + TG S CS+ + + PLS S++
Sbjct: 650 ESVISSWGGSVHTGTSSSSCSVTNLVVKFCTLPLSQWSLL 689
>01_06_0083 +
26283492-26283756,26284255-26284467,26284620-26284771,
26284884-26285157,26285277-26285485
Length = 370
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 447 NRKRFQEDDPLL*CCKSHCPXSNEAVKTATKEGSHYGNP 563
N +RF +DPLL CC H P A T + + +G+P
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGA--TCDRTATVWGDP 333
>04_04_1477 +
33873976-33874080,33874433-33874544,33874777-33874874,
33875548-33876261,33876348-33876518,33876955-33877011,
33877096-33878718
Length = 959
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = +1
Query: 547 HIMEIQLNGGTIEDKVKWAREHLEKPIPVDS 639
H++E + N ++++K+K +H E +P+DS
Sbjct: 460 HLLEDRENNESVDEKIKGDAQHEENTLPLDS 490
>05_04_0324 - 20273797-20274261
Length = 154
Score = 29.1 bits (62), Expect = 4.3
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +1
Query: 106 FPKDDPSKPVHLTAFIGYKAGMTHVVRE--PDRPGSKINKKEIVEAVTIIETPPMVCVGV 279
FP D+P K VH+ G + +T ++ E P + +N EA + P CVGV
Sbjct: 60 FPPDNPQKFVHVHRVFG-ASNVTKLLNELHPYQREDAVNSL-AYEADMRLRDPVYGCVGV 117
Query: 280 VGYIETPHGLRAL 318
+ ++ H LR L
Sbjct: 118 ISVLQ--HQLRQL 128
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,525,151
Number of Sequences: 37544
Number of extensions: 475237
Number of successful extensions: 1039
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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