Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D13
         (794 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               304   6e-83
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         240   8e-64
SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.5  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  304 bits (746), Expect = 6e-83
 Identities = 139/238 (58%), Positives = 166/238 (69%), Gaps = 1/238 (0%)
 Frame = +1

Query: 28  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 207
           F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE ++PGS
Sbjct: 5   FEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEKPGS 64

Query: 208 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 387
           K+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW   
Sbjct: 65  KLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNS 124

Query: 388 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHXXXXXXXXXXXXAHIMEIQL 567
                      W D+ G+KSIE+DF  M +YC V+RVI H            AHIMEIQ+
Sbjct: 125 KKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQV 184

Query: 568 NGG-TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTKKLPR 738
           NGG  + +KV W RE LE P PV  VF+ DEMID I             RW TKKLPR
Sbjct: 185 NGGKDVAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPR 242



 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = +2

Query: 716 GTQRSYPVKTHKGLXKVACIGAWHPS 793
           GT++  P KTHKGL KVACIGAWHP+
Sbjct: 236 GTKK-LPRKTHKGLRKVACIGAWHPA 260


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  240 bits (588), Expect = 8e-64
 Identities = 104/167 (62%), Positives = 127/167 (76%)
 Frame = +1

Query: 7   PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVR 186
           P      F+ P HGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++R
Sbjct: 46  PKMSHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILR 105

Query: 187 EPDRPGSKINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRF 366
           E ++PGSK+NKKE VEAVTIIETPPM+ VGVVGYIETP G+R L T+WAEH+SE+C+RRF
Sbjct: 106 EVEKPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEECKRRF 165

Query: 367 YKNWYXXXXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAH 507
           YKNW              W D+ G+KSIE+DF  M +YC V+RVI H
Sbjct: 166 YKNWCNSKKKAFTKASKRWADDDGKKSIEEDFNTMKKYCKVIRVICH 212


>SB_23052| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 479

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 7   PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 135
           P C T+  QHP   S+ F  KK +  ++G  K++ K  P+KPV
Sbjct: 191 PVCDTDGQQHPNLCSLHFQGKKLA--YKGFCKSYCK-SPTKPV 230


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,791,203
Number of Sequences: 59808
Number of extensions: 549160
Number of successful extensions: 1173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)