Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D11
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    36   0.009
SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|...    33   0.063
SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase |Schizosac...    32   0.083
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    27   3.1  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    27   4.1  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    26   5.5  
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    26   5.5  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.2  
SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomy...    26   7.2  
SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyros...    25   9.6  
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch...    25   9.6  
SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease ...    25   9.6  

>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 356 GGMVFNSQNQILVVVEQHTDIVHWKLPGGYVERGEDIKDAVIREVMEETGIEAS 517
           G ++ +   Q  V+V+       W  P G +++ E   D  IREV EETG + S
Sbjct: 100 GAIMLDMSMQQCVLVKGWKASSGWGFPKGKIDKDESDVDCAIREVYEETGFDCS 153


>SPBC1778.03c |||NADH pyrophosphatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 32.7 bits (71), Expect = 0.063
 Identities = 11/24 (45%), Positives = 20/24 (83%)
 Frame = +2

Query: 440 GYVERGEDIKDAVIREVMEETGIE 511
           G++E GE +++AV+RE  EE+G++
Sbjct: 259 GFLEPGESLEEAVVRETYEESGVD 282


>SPBP35G2.12 |||nucleoside diphosphate-sugar hydrolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 205

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 16/54 (29%), Positives = 31/54 (57%)
 Frame = +2

Query: 428 KLPGGYVERGEDIKDAVIREVMEETGIEASFDSIVTLRHSHNSMFGNSDIYIVV 589
           ++P G V+  E  +DA IRE+ EETG   +     T+ ++   +  N+++ I++
Sbjct: 86  EIPAGLVDSKESCEDAAIRELREETGYVGTVMDSTTVMYNDPGL-TNANLKIIL 138


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = -1

Query: 346 ICMACWWQIGFAVCRQPFVHHNKTVPGVMEIKSSLGKYGHPVCM---FYIHFKP 194
           IC  C+ +I  A    P VH N+  P   ++ S   K   P CM   F + +KP
Sbjct: 172 ICSECFVEIRRAEPHLPTVHANEPTPNEFDLISEPAKC--PYCMTERFGVIYKP 223


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 419 VHWKLPGGYVERGEDIKDAVIREVMEETGIE 511
           V+ KLP  ++ +G+   DA+ R  +EE  IE
Sbjct: 576 VYHKLPESFIGQGKFGADAIQRRAVEELNIE 606


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 203 VNIKHADWVPILAKAGFDFHHSRDSFVMMYKWLPTNSKANLPPACHTNLG 352
           + I  ++W+P+L ++        D  ++   +LPT  K  +   C TN+G
Sbjct: 67  IKIMSSEWIPVLYESWVQGEDLDDGLLVDKHFLPTLFKCRV---CLTNIG 113


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 431 LPGGYVERG-EDIKDAVIREVMEETGIEASFDSIVTLRHSHNS 556
           L GG V +G +DI   V+    E+TG+    DS  TL  +  S
Sbjct: 426 LTGGSVSKGADDILQHVLHLKSEQTGVVVGPDSTPTLSFTSGS 468


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +2

Query: 323 LPPACHT-NLGVGGMVFNSQNQILVVVEQHTD--IVHWKLPGGYVERGEDIKDAVIREVM 493
           + PAC   N+ +G       + + +V E   D  ++ +K  G +  R ED+   VIR   
Sbjct: 729 MKPACFLKNVAIGEKYVEPYDHMEIVDETTGDKAVIRFKSGGMFSGRSEDVLVTVIRSNG 788

Query: 494 EE 499
           EE
Sbjct: 789 EE 790


>SPAC1687.18c |ssl3||cohesin loading factor Ssl3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 300 CLQTAKPICHQHAIQILV*EVWSLIAK 380
           CL++ +P+C++H  +I   ++W L+ K
Sbjct: 427 CLESIEPLCNKHEKKIF--KLWLLVLK 451


>SPAC1071.12c |stp1|SPAC926.01c|low molecular weight phosphotyrosine
           protein phosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 156

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 470 DAVIREVMEETGIEASFDSI 529
           +AV R  +E+ G+EA FD+I
Sbjct: 22  EAVFRNEVEKAGLEARFDTI 41


>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 492

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 237 SMGTQSACFIFTLNHMQRLFCSDHFFK 157
           S+G  S C +F L+ +   FC   F+K
Sbjct: 78  SLGAMSLCDVFHLSFLYNPFCRYTFYK 104


>SPAC22A12.01c |pso2|snm1, SPAC56F8.17c, snm1|DNA 5' exonuclease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 560

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = -1

Query: 481 YNSIFDVFTSFNITSW*F-PMNNIGML 404
           YNS FD    + +T W F P+ N   L
Sbjct: 438 YNSSFDKIIGYKVTGWTFQPLENRAQL 464


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,133,883
Number of Sequences: 5004
Number of extensions: 63004
Number of successful extensions: 158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)