Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D09
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    26   4.3  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   7.5  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   7.5  
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch...    25   9.9  

>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = +2

Query: 173 HNSIIASRTLSTTSVRTWQRACRIWSFLRWNLSLLIGW*WKTL 301
           HN  I      T   R W  +C ++ F     +L   W W+ L
Sbjct: 38  HNGEIVGGASKTKHGRPWSISCLVYGFPNKVSALKFEWNWQNL 80


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 422 YLVSRSQVVTRCQDKFSSFRLDH 490
           Y V+ S +VTR    F  F LDH
Sbjct: 468 YGVAISDIVTRINSAFGDFSLDH 490


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 221 TWQRACRIWSFLRWNLSLLIGW 286
           TW  +  IW FL W L+ ++ W
Sbjct: 112 TWDVSLSIWRFLYW-LTFVLSW 132


>SPBC14C8.04 |||acetolactate synthase regulatory
           unit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 629 LNXEFLSLKSTSNLSAVMYLTLSLSTSLPK 540
           L   F+ LKSTS  S + Y  L  ++ LP+
Sbjct: 9   LANRFVRLKSTSATSPITYKALHANSPLPR 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,609,143
Number of Sequences: 5004
Number of extensions: 51234
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)