Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D09
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0235 - 16702768-16702956,16703956-16704492,16705084-167052...    34   0.12 
05_03_0249 - 10946993-10947073,10947307-10947432,10948497-109485...    28   7.7  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    28   7.7  

>02_03_0235 -
           16702768-16702956,16703956-16704492,16705084-16705233,
           16705310-16705625,16707005-16707286,16707895-16707971,
           16708121-16708186,16708700-16709246,16709435-16709565,
           16709642-16709746,16709859-16710039,16710123-16710185,
           16711000-16711109,16711576-16711638,16711859-16712191
          Length = 1049

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 321 RYPDWPG-RVFHHQPINKERFHRRKLQIRQALCQVRTEVVERVLDAIIELWIASC 160
           R P WPG R    +   +E F RR+ Q+R+    VR + V  + + +  + +A C
Sbjct: 54  RAPAWPGDRRRQRERAFREEFERRRRQLRELCRAVRVDTVAELQELLCAVVLAEC 108


>05_03_0249 -
           10946993-10947073,10947307-10947432,10948497-10948552,
           10949066-10949338,10951434-10951716
          Length = 272

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +1

Query: 274 IDRLVMENSAGPVRV-TAAFSNITVIGPSNYTVTKIRSDLKKLRIDLGLVLPRIEI 438
           IDR   +   GPV V T A + + V+G S Y++ KIR  +     DLG + P  ++
Sbjct: 33  IDRA--KRGRGPVMVKTVAATMLVVLGSSGYSIAKIRRRVG----DLGQLTPTDQV 82


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = -3

Query: 307 ARQSFPSPADQ*REVPPEEAPDPAGPLPGTDGGG 206
           AR   PSP       PP   P P  P P   GGG
Sbjct: 42  ARHRAPSPPRPPPPPPPPTQPAPPPPPPARSGGG 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,195,757
Number of Sequences: 37544
Number of extensions: 361446
Number of successful extensions: 1106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1106
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)