Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D09
         (669 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.4  
SB_42787| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  
SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.9  

>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -2

Query: 599 TSNLSAVMYLTLSLSTSLPKIFAMAXTSINAAQKSPRDLTGKRRTCPDTS 450
           T + +++  +T  L  S+ K+FAMA  S   A KS   +T K   C D S
Sbjct: 177 TESFASLRTITEQLQNSVCKLFAMAPYSDCEADKSSGVITCKCPDCKDKS 226


>SB_42787| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = -1

Query: 327 RSRYPDWPGRVFHHQPINKERFHRRKLQIRQALCQVRTEV 208
           + ++ +W G  F +Q I +   H R+++  +A+ Q ++EV
Sbjct: 18  QEKFLEWTGEGFRNQIIEQSYQHEREIKTGKAIQQQQSEV 57


>SB_5461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1766

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
 Frame = -1

Query: 600  NQQSVGRHVSHVVPLNL---FTEDLRYGRYINKRSP 502
            N+ S  RHV +  PL+L     +D+RY R+++  SP
Sbjct: 1370 NELSERRHVLNNSPLSLHGTMPDDIRYSRHMHNNSP 1405


>SB_2606| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1352

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 163 RSDPQLDNCIKNSFNHLRPYLAK 231
           RSDP L   I NSF+H+  ++A+
Sbjct: 610 RSDPDLRGVIPNSFDHIFTHIAR 632


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,001,996
Number of Sequences: 59808
Number of extensions: 411800
Number of successful extensions: 1274
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)