Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P14_F_D09
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    50   2e-08

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 50.0 bits (114), Expect = 2e-08
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 3/174 (1%)
 Frame = +1

Query: 157 CTRSDPQLD--NCIKNSFNHLRPYLAKGXXXXXXXXXXXXFIDRLVMENSAGPVRVTAAF 330
           C RS PQ +   CI  +       LA G             +D + +  S G V +   +
Sbjct: 31  CDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEY 90

Query: 331 SNITVIG-PSNYTVTKIRSDLKKLRIDLGLVLPRIEITGRYEVSGQVLLFPVRSRGDFWA 507
            NI + G   N  +     D  K  +      P+++    Y++ G+VLL PVR  G    
Sbjct: 91  KNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNI 150

Query: 508 AFIDVXAIAKIFGKEVERDNVRYMTADRLLVDFKLRNSXFKVKDTVNHGSVIGE 669
              D+ +   I+ ++ E++   Y+   +  V F       + ++  +    +GE
Sbjct: 151 TMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGE 204


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,612
Number of Sequences: 438
Number of extensions: 3791
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)