Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_D08
(480 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 31 0.49
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42) 29 1.5
SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3) 29 1.5
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_42750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004) 29 2.6
SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.6
SB_15380| Best HMM Match : RA (HMM E-Value=0.11) 28 4.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 28 4.6
SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12) 27 6.1
SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24) 27 6.1
SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 31.1 bits (67), Expect = 0.49
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Frame = +1
Query: 145 ILDTDRCAPDAKELKEHIREALETECAKCTEAQKK-----GTRRVIGHLINNESESWNEL 309
I +T + ++ K + ALE AK TE ++ +++ + E+E NEL
Sbjct: 2341 IAETGDRLDELRKAKTELESALEEAKAKITEKEESLVAFAAESKIVRDQLERETEEKNEL 2400
Query: 310 TAKYDPENKFTAKYEKELREIKA*DTNAKLSYEM 411
T++ + KYE+ + + N K + +M
Sbjct: 2401 TSQIESLVDKVKKYEEASSTVMKENENLKRNLQM 2434
>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
Length = 704
Score = 29.5 bits (63), Expect = 1.5
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 34 WPWLSPVPDDKYTDRYDNVNLDEVLSNSRLLQPYI-KCILDTDRCAPDAKELKEHI 198
WP L+P+ D++ D + +L+P + C+ D R PDA L + +
Sbjct: 238 WP-LTPIKDNRKISELVRRKKDLEVMGQHILRPLVVSCLKDNSRSRPDAASLVKQL 292
>SB_6803| Best HMM Match : 7tm_1 (HMM E-Value=4.3)
Length = 129
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +2
Query: 164 VPLTLRS*RNTSGRHSRPNARNVPKPRRRVLDVLSAI 274
V LT R T G HS+ N RN+ + RVL +L I
Sbjct: 22 VILTFLWQRKTPGEHSKTNKRNMDNRKMRVLKMLLTI 58
>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1913
Score = 29.1 bits (62), Expect = 2.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 160 RCAPDAKELKEHIREALETECAKCTEAQKKGTRRV 264
+C+P+A L + +REA + KC +A + R+
Sbjct: 1608 QCSPNAATLTKALREACQLRFQKCLDAHPEAAARI 1642
>SB_16305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1122
Score = 28.7 bits (61), Expect = 2.6
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Frame = +1
Query: 37 PWLSPVPDDKYTDRYDNVNLDEVLSNSRLLQPYIKCILDTDRCAPDAKELKEHIREALET 216
P+ V D YT + + D + S+ +C+L D KEL +H R
Sbjct: 674 PYKCNVCDKSYTRQ--KMLTDHMYSHEESGTKIYRCVL-CDDVFDQIKELTKHQRTHKTD 730
Query: 217 ECAKCTEAQKKGTRRVIG---HLINNESE 294
KC E KK RR+ G HL+ + E
Sbjct: 731 AVYKCQECDKK-FRRISGLKDHLLTHRGE 758
>SB_42750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +1
Query: 190 EHIREALETECAK----CTEAQKKGTRRVIGHLINNESESWNELTAKYDPENKFTAKYEK 357
EH R++L++EC K C E Q+ T I ++ +ES + + D + +A Y
Sbjct: 16 EHGRDSLKSECGKESFQCDEIQEAETAGPISRSADSSTESPEQTPSTGDGQVTRSANYPS 75
Query: 358 E 360
E
Sbjct: 76 E 76
>SB_11996| Best HMM Match : FYVE (HMM E-Value=0.004)
Length = 610
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -3
Query: 154 CRGYI*CKAEEVENC*GPHLN*RCRSDRC-TCRQXLARATAK 32
CRG CK NC LN R +S RC TCR A +T K
Sbjct: 82 CRG---CKKTLCSNCFTQGLNARDQSPRCITCRALAAPSTHK 120
>SB_34344| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 845
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 88 VNLDEVLSNSRLLQPYIKCILDTDRCAPDAKELKEHIREAL 210
+ + E + N R +Q KC+LDT D + + +H++E +
Sbjct: 516 IEISENVDN-RTVQREEKCLLDTGTIRTDPESILDHLKETI 555
>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
Length = 2124
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 181 ELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESESWNELTAKYDPENKFTAKYEKE 360
E+ + +E + + + E++K+G + G + +E E W E + D K K E E
Sbjct: 1134 EVDKSDKEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKEKEGEVDESEKEGWKTEGE 1193
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 262 HVEYPSSGLRYI-SRIRSRVPP*CVPSTP*R 173
H+ YP S LRY+ S +R PP P +P R
Sbjct: 401 HLRYPPSSLRYLPSHLRYPPPPLRYPPSPLR 431
>SB_35716| Best HMM Match : PC4 (HMM E-Value=1.1e-12)
Length = 501
Score = 27.5 bits (58), Expect = 6.1
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +1
Query: 202 EALE---TECAKCTEAQKKGTRRVIGHLINNESESWNELTAKYDPENKFTAKYEKELREI 372
EALE T+ KC+ Q++G + +++ ES + NE+T D K + + + + E
Sbjct: 36 EALEFPLTKKRKCSNDQEEGGKST--QMVSLESVAGNEMTGSPDSNKKQSGRKKHKKPEC 93
Query: 373 KA*DTNAKLSYEMC 414
K ++C
Sbjct: 94 KGSQRKLGFQSDLC 107
>SB_6197| Best HMM Match : C2 (HMM E-Value=3.7e-24)
Length = 569
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Frame = +1
Query: 136 IKCI--LDTDRCAP----DAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESES 297
+ CI L RC P D +E KE+I A T C E +KK ++ L+ E +
Sbjct: 437 VHCINSLQPFRCEPMEQEDERENKEYISTAAVTVCEMDGEDKKKSKKQ----LVTTEIDW 492
Query: 298 WNELTAKYDPENK 336
W++ A K
Sbjct: 493 WSKFYASVGDTEK 505
>SB_51621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 510
Score = 27.1 bits (57), Expect = 8.0
Identities = 7/41 (17%), Positives = 21/41 (51%)
Frame = +1
Query: 235 EAQKKGTRRVIGHLINNESESWNELTAKYDPENKFTAKYEK 357
+ + GT+ + G + + W E+ Y+ +N + ++++
Sbjct: 83 KVSESGTKNIFGGYSSKRMKDWQEIIRLYEKDNVYLGEFDE 123
>SB_21192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 511
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 101 RSSAILDFFSLTLNVSSTRTGVPL 172
RSS I+D FS LN R G PL
Sbjct: 71 RSSTIIDLFSFPLNGDQYRCGNPL 94
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 7 SSHSACLPFWPWLSPVPDDKYTDRYDNVNLD 99
+SH + F WL +P D Y ++ ++LD
Sbjct: 232 TSHESTGNFISWLKSLPQDSYVSDFEPMDLD 262
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,080,443
Number of Sequences: 59808
Number of extensions: 265506
Number of successful extensions: 856
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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