Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P14_F_D05
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 35 0.010
SPAC6B12.12 |tom70||mitochondrial TOM complex subunit Tom70|Schi... 33 0.032
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 31 0.13
SPBC577.15c |||NASP family histone binding protein|Schizosacchar... 30 0.39
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.7
SPCC1020.09 |||WD repeat protein, human WDR79 family|Schizosacch... 26 4.8
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 26 4.8
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 26 6.4
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo... 26 6.4
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.5
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr... 25 8.5
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 25 8.5
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.5
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 25 8.5
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 35.1 bits (77), Expect = 0.010
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +3
Query: 573 SIQERIDLIPTLKEKGNSLYGEKKYDEAEEAYNEAL 680
S QE +L K GN+ Y EKKY EA +AY EA+
Sbjct: 15 SQQEPAELAEKQKAIGNAFYKEKKYAEAIKAYTEAI 50
Score = 29.5 bits (63), Expect = 0.52
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = +3
Query: 582 ERIDLIPTLKEKGNSLYGEKKYDEAEEAYNEALAI 686
+++ + K +GN L+ + Y +A E Y+EAL I
Sbjct: 218 KQVRKLENTKNQGNDLFRQGNYQDAYEKYSEALQI 252
>SPAC6B12.12 |tom70||mitochondrial TOM complex subunit
Tom70|Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 33.5 bits (73), Expect = 0.032
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 552 EREMWQLSIQERIDLIPTLKEKGNSLYGEKKYDEAEEAYNEAL 680
E + ++ +ER L LK GN YG+K+Y A + Y +A+
Sbjct: 136 EESVKSMTKEERAKLAAELKTLGNKAYGQKEYANAIDYYTQAI 178
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 591 DLIPTLKEKGNSLYGEKKYDEAEEAYNEALA 683
++ +E GN + K+Y +AEE Y +ALA
Sbjct: 62 EVAQNFREHGNECFASKRYKDAEEFYTKALA 92
>SPBC577.15c |||NASP family histone binding
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 396
Score = 29.9 bits (64), Expect = 0.39
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 597 IPTLKEKGNSLYGEKKYDEAEEAYNEALAICEQL 698
I L +GN Y +K Y+EA + Y +AL E +
Sbjct: 32 IEQLVTQGNMAYAQKNYEEAVDKYGQALMQSESI 65
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 3.7
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = +3
Query: 474 LDEIITKPCDLEFIIELLKVEHSD-EYEREMWQLSIQERIDLIPTLKEKGNSLYGEKKYD 650
LDE ++K LE IE LK + S+ E ER L+ ER L+ LK G ++ +
Sbjct: 978 LDETLSKSSKLEADIEHLKNKVSEVEVERNA-LLASNER--LMDDLKNNGENIASLQTEI 1034
Query: 651 EAEEAYNEAL 680
E + A N+ L
Sbjct: 1035 EKKRAENDDL 1044
>SPCC1020.09 |||WD repeat protein, human WDR79
family|Schizosaccharomyces pombe|chr 3|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +3
Query: 201 GQERVLIDDSRKIGKKEPMVLVLGHKFKLEVWETVVK 311
G + L + + G KEP++ + H +K+ +WE +K
Sbjct: 173 GDKNCLHHFNIRTGCKEPVMTTVTHGYKVPLWEFSLK 209
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 576 IQERIDLIPTLKEKGNSLYGEKKYDEA-EEAYNEALAICEQLMIRERKGDE 725
+QER+D++ L ++ LY K+DE +EA + EQ + R+ D+
Sbjct: 223 MQERLDILTNLLDELTLLYETDKFDETMKEAILSFEDLKEQEIRRKVSSDD 273
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.8 bits (54), Expect = 6.4
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +3
Query: 486 ITKPCDLEFIIELLKVEHSDEYEREMWQLSIQERIDLIP----TLKEKGNSLYGEKKYDE 653
I K + E + L K++ + EM+ + R+D++P TLK + +G +
Sbjct: 121 IEKMSEEELMESLSKIKGVKRWTIEMYSIFTLGRLDIMPADDSTLKNEAKEFFGLSSKPQ 180
Query: 654 AEE 662
EE
Sbjct: 181 TEE 183
>SPBC18A7.02c |||seven transmembrane receptor-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 457
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = -2
Query: 701 HKLFTYSKCFIVCLLCFIIFLFSIQTVAFLF*CWN 597
+ L + K F + +LC ++ +FS VA +F C N
Sbjct: 348 YTLHSIYKIFRIMVLCGVVTIFSFSLVALIF-CSN 381
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 25.4 bits (53), Expect = 8.5
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = -2
Query: 725 FITFSFPDHKLFTYSKCFIVCLLCFIIFLFSIQTVAFLF*CWNQIYSLLYT*LPHL 558
F++FSF LF S+ FIV F I F + F F C S L++ L HL
Sbjct: 126 FLSFSFSFSFLFFLSQIFIVYFSSFPILHF----LFFFFLCVCVFLSFLFS-LSHL 176
>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 553
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 674 FIVCLLCFIIFLFSIQTVAFLF*C 603
F VCLL + L+S + ++F F C
Sbjct: 22 FHVCLLIMFLILYSQEILSFFFMC 45
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/31 (29%), Positives = 21/31 (67%)
Frame = +1
Query: 478 MKSSPNHAIWSSL*NYLKWNIQMNMKERCGS 570
+K++P+ WS++ YL++ ++ K++ GS
Sbjct: 177 LKANPHQQGWSNMMLYLRYQVEEFAKKKWGS 207
>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 54 KLNRXKFIKLRXKMXXSAPIVKKIIHTGQKY 146
KL+ ++KL M +API++ I H QKY
Sbjct: 956 KLSIVVYLKL---MGITAPIIRAITHMSQKY 983
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 212 SFLAKFPCLKVEVNLASFSNGNIFLTCMYYFF 117
++L FP L +E+NL+ GN+ T +Y F
Sbjct: 412 AYLGVFPEL-LEINLSKGKLGNMIYTALYMMF 442
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,915,956
Number of Sequences: 5004
Number of extensions: 61556
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -